{ "type": "genome", "identifier": "GCF_003386945.1", "organism": "Halobacillus trueperi", "title": "Halobacillus trueperi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "ChunLab", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003386945.1", "bioproject": "PRJNA224116", "biosample": "SAMN09770327", "wgs_master": "QUAE00000000.1", "refseq_category": "reference genome", "taxid": "156205", "species_taxid": "156205", "organism_name": "Halobacillus trueperi", "infraspecific_name": "strain=KCTC 3686", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/14", "asm_name": "ASM338694v1", "asm_submitter": "ChunLab", "gbrs_paired_asm": "GCA_003386945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/386/945/GCF_003386945.1_ASM338694v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4112483", "genome_size_ungapped": "4112483", "gc_percent": "43.500000", "replicon_count": "0", "scaffold_count": "66", "contig_count": "66", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003386945.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "4120", "protein_coding_gene_count": "3988", "non_coding_gene_count": "104", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-14", "dateModified": "2018-08-14", "datePublished": "2018-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Halobacillus trueperi" ], "sample_taxid": [ "156205" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not available" ], "sample_host_location_id": [], "data_size": "1.174 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4112483", "Number of Sequences": "66", "Longest Sequences (bp)": "481108", "N50 (bp)": "236500", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.6", "Number of CDSs": "4066", "Average Protein Length": "284.1", "Coding Ratio (%)": "84.3", "Number of rRNAs": "10", "Number of tRNAs": "69", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halobacillus trueperi", "strain": "strain=KCTC 3686", "accession": "GCA_003386945.1", "taxid": 156205, "species_taxid": 156205, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1338, "total_fragments": 1342, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Halobacillus aidingensis", "strain": "strain=CGMCC 1.3703", "accession": "GCA_900104185.1", "taxid": 240303, "species_taxid": 240303, "relation_to_type": "type", "validated": true, "ani": 96.5081, "matched_fragments": 1219, "total_fragments": 1342, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Halobacillus faecis", "strain": "strain=NBRC 103569", "accession": "GCA_007991335.1", "taxid": 360184, "species_taxid": 360184, "relation_to_type": "type", "validated": true, "ani": 88.6057, "matched_fragments": 1044, "total_fragments": 1342, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halobacillus litoralis", "strain": "strain=SL-4", "accession": "GCA_009856445.1", "taxid": 45668, "species_taxid": 45668, "relation_to_type": "suspected-type", "validated": true, "ani": 88.0331, "matched_fragments": 1099, "total_fragments": 1342, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halobacillus karajensis", "strain": "strain=DSM 14948", "accession": "GCA_900108515.1", "taxid": 195088, "species_taxid": 195088, "relation_to_type": "type", "validated": true, "ani": 80.9233, "matched_fragments": 622, "total_fragments": 1342, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halobacillus salinus", "strain": "strain=HSL-3", "accession": "GCA_004684905.1", "taxid": 192814, "species_taxid": 192814, "relation_to_type": "type", "validated": true, "ani": 78.4157, "matched_fragments": 274, "total_fragments": 1342, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900104185.1", "gtdb_species": "s__Halobacillus aidingensis", "ani": 96.4902, "matched_fragments": 1220, "total_fragments": 1342, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Halobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.52", "min_intra_species_ani": "96.52", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_009856415.1", "gtdb_species": "s__Halobacillus litoralis_C", "ani": 90.4306, "matched_fragments": 1167, "total_fragments": 1342, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Halobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007991335.1", "gtdb_species": "s__Halobacillus faecis", "ani": 88.5925, "matched_fragments": 1045, "total_fragments": 1342, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Halobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009856445.1", "gtdb_species": "s__Halobacillus litoralis", "ani": 88.0245, "matched_fragments": 1100, "total_fragments": 1342, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Halobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.88", "min_intra_species_ani": "95.88", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900108515.1", "gtdb_species": "s__Halobacillus karajensis", "ani": 80.9309, "matched_fragments": 623, "total_fragments": 1342, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Halobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.38", "min_intra_species_ani": "99.37", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_900114165.1", "gtdb_species": "s__Halobacillus dabanensis", "ani": 80.8235, "matched_fragments": 621, "total_fragments": 1342, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Halobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000469135.2", "gtdb_species": "s__Halobacillus sp001592845", "ani": 79.251, "matched_fragments": 316, "total_fragments": 1342, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Halobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.23", "min_intra_species_ani": "99.19", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_013694105.1", "gtdb_species": "s__Halobacillus locisalis", "ani": 78.4933, "matched_fragments": 306, "total_fragments": 1342, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Halobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_902809865.1", "gtdb_species": "s__Halobacillus_A sp902809865", "ani": 78.1383, "matched_fragments": 175, "total_fragments": 1342, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Halobacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.155, "cell_length": 0.301, "doubling_h": -0.377, "growth_tmp": 33.0, "optimum_tmp": 32.636, "optimum_ph": 7.613, "genome_size": 4082902.0, "gc_content": 43.292, "coding_genes": 3983.0, "rRNA16S_genes": 7.0, "tRNA_genes": 67.5, "gram_stain": 1.0, "sporulation": 1.0, "motility": 0.8, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.909, "coccus_cell_shape": 0.09, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Halobacillus", "trueperi" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }