{ "type": "genome", "identifier": "GCF_003387655.1", "organism": "Algoriphagus antarcticus", "title": "Algoriphagus antarcticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003387655.1", "bioproject": "PRJNA224116", "biosample": "SAMN08776961", "wgs_master": "QUNF00000000.1", "refseq_category": "na", "taxid": "238540", "species_taxid": "238540", "organism_name": "Algoriphagus antarcticus", "infraspecific_name": "strain=DSM 15986", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/14", "asm_name": "ASM338765v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003387655.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/387/655/GCF_003387655.1_ASM338765v1", "excluded_from_refseq": "na", 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"Antarctica: Lake Reid, Larsemann Hills" ], "sample_host_location_id": [], "data_size": "1.680 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5923881", "Number of Sequences": "79", "Longest Sequences (bp)": "645918", "N50 (bp)": "176287", "Gap Ratio (%)": "0.047131", "GCcontent (%)": "40.4", "Number of CDSs": "4804", "Average Protein Length": "342.9", "Coding Ratio (%)": "83.4", "Number of rRNAs": "3", "Number of tRNAs": "39", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Algoriphagus antarcticus", "strain": "strain=DSM 15986", "accession": "GCA_003387655.1", "taxid": 238540, "species_taxid": 238540, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1926, 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"mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900116615.1", "gtdb_species": "s__Algoriphagus locisalis", "ani": 80.4155, "matched_fragments": 813, "total_fragments": 1930, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Algoriphagus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003259505.1", "gtdb_species": "s__Algoriphagus yeomjeoni", "ani": 80.2806, "matched_fragments": 842, "total_fragments": 1930, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Algoriphagus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.397, "doubling_h": 0.69, "growth_tmp": 20.0, "optimum_tmp": 20.0, "optimum_ph": 7.375, "genome_size": 5923881.0, "gc_content": 43.837, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Algoriphagus", "antarcticus" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }