{ "type": "genome", "identifier": "GCF_003389455.1", "organism": "Streptomyces inhibens", "title": "Streptomyces inhibens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "School of life science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003389455.1", "bioproject": "PRJNA224116", "biosample": "SAMN09770273", "wgs_master": "QUAC00000000.1", "refseq_category": "na", "taxid": "2293571", "species_taxid": "2293571", "organism_name": "Streptomyces inhibens", "infraspecific_name": "strain=NEAU-D10", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/14", "asm_name": "ASM338945v1", "asm_submitter": "School of life science", "gbrs_paired_asm": "GCA_003389455.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/389/455/GCF_003389455.1_ASM338945v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9477917", "genome_size_ungapped": "9477849", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "486", "contig_count": "486", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003389455.1-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "8884", "protein_coding_gene_count": "8159", "non_coding_gene_count": "77", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-14", "dateModified": "2018-08-14", "datePublished": "2018-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces inhibens" ], "sample_taxid": [ "2293571" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Harbin" ], "sample_host_location_id": [], "data_size": "2.583 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 9.38, "strain_heterogeneity": 33.33, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9477917", "Number of Sequences": "486", "Longest Sequences (bp)": "165011", "N50 (bp)": "33076", "Gap Ratio (%)": "0.002807", "GCcontent (%)": "70.5", "Number of CDSs": "8513", "Average Protein Length": "303.3", "Coding Ratio (%)": "81.7", "Number of rRNAs": "1", "Number of tRNAs": "82", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces inhibens", "strain": "strain=NEAU-D10", "accession": "GCA_003389455.1", "taxid": 2293571, "species_taxid": 2293571, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2904, "total_fragments": 2927, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces decoyicus", "strain": "strain=NRRL 2666", "accession": "GCA_001270575.1", "taxid": 249567, "species_taxid": 249567, "relation_to_type": "type", "validated": true, "ani": 89.6003, "matched_fragments": 1951, "total_fragments": 2927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces libani subsp. libani", "strain": "strain=JCM 4322", "accession": "GCA_014649275.1", "taxid": 68044, "species_taxid": 68043, "relation_to_type": "type", "validated": true, "ani": 89.5901, "matched_fragments": 2076, "total_fragments": 2927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces libani subsp. libani", "strain": "strain=NBRC 13452", "accession": "GCA_009811595.1", "taxid": 68044, "species_taxid": 68043, "relation_to_type": "type", "validated": true, "ani": 89.5879, "matched_fragments": 2078, "total_fragments": 2927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces decoyicus", "strain": "strain=NRRL 2666", "accession": "GCA_019880305.1", "taxid": 249567, "species_taxid": 249567, "relation_to_type": "type", "validated": true, "ani": 89.5715, "matched_fragments": 2030, "total_fragments": 2927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lydicamycinicus", "strain": "strain=NBRC 110027", "accession": "GCA_000829715.2", "taxid": 1546107, "species_taxid": 1546107, "relation_to_type": "type", "validated": true, "ani": 89.3491, "matched_fragments": 1983, "total_fragments": 2927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces platensis", "strain": "strain=DSM 40041", "accession": "GCA_002119195.1", "taxid": 58346, "species_taxid": 58346, "relation_to_type": "type", "validated": true, "ani": 89.1665, "matched_fragments": 1913, "total_fragments": 2927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces platensis", "strain": "strain=ATCC 23948", "accession": "GCA_008704855.1", "taxid": 58346, "species_taxid": 58346, "relation_to_type": "type", "validated": true, "ani": 89.1214, "matched_fragments": 1966, "total_fragments": 2927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces caniferus", "strain": "strain=NBRC 15389", "accession": "GCA_009811555.1", "taxid": 285557, "species_taxid": 285557, "relation_to_type": "type", "validated": true, "ani": 89.0966, "matched_fragments": 2039, "total_fragments": 2927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces sioyaensis", "strain": "strain=DSM 40032", "accession": "GCA_004122735.1", "taxid": 67364, "species_taxid": 67364, "relation_to_type": "type", "validated": true, "ani": 88.84, "matched_fragments": 1764, "total_fragments": 2927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lydicus", "strain": "strain=ATCC 25470", "accession": "GCA_004125245.1", "taxid": 47763, "species_taxid": 47763, "relation_to_type": "suspected-type", "validated": true, "ani": 88.6635, "matched_fragments": 1961, "total_fragments": 2927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lydicus", "strain": "strain=NRRL ISP-5461", "accession": "GCA_000717345.1", "taxid": 47763, "species_taxid": 47763, "relation_to_type": "suspected-type", "validated": true, "ani": 88.5827, "matched_fragments": 1977, "total_fragments": 2927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces pinistramenti", "strain": "strain=SF28", "accession": "GCA_020564935.1", "taxid": 2884812, "species_taxid": 2884812, "relation_to_type": "type", "validated": true, "ani": 85.7275, "matched_fragments": 1581, "total_fragments": 2927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces benahoarensis", "strain": "strain=MZ03-37", "accession": "GCA_007280575.1", "taxid": 2595054, "species_taxid": 2595054, "relation_to_type": "type", "validated": true, "ani": 84.4555, "matched_fragments": 1229, "total_fragments": 2927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rimosus subsp. rimosus", "strain": "strain=R7", "accession": "GCA_022760195.1", "taxid": 132474, "species_taxid": 1927, "relation_to_type": "type", "validated": true, "ani": 83.7671, "matched_fragments": 1607, "total_fragments": 2927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces monomycini", "strain": "strain=NRRL B-24309", "accession": "GCA_022271435.1", "taxid": 371720, "species_taxid": 371720, "relation_to_type": "type", "validated": true, "ani": 83.6701, "matched_fragments": 1563, "total_fragments": 2927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces paromomycinus", "strain": "strain=NBRC 15454", "accession": "GCA_003865155.1", "taxid": 92743, "species_taxid": 92743, "relation_to_type": "type", "validated": true, "ani": 83.6189, "matched_fragments": 1633, "total_fragments": 2927, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 9.38, "strain_heterogeneity": 33.33 }, "gtdb_result": [ { "accession": "GCF_003389455.1", "gtdb_species": "s__Streptomyces inhibens", "ani": 100.0, "matched_fragments": 2904, "total_fragments": 2927, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_001270575.1", "gtdb_species": "s__Streptomyces decoyicus", "ani": 89.5923, "matched_fragments": 1952, "total_fragments": 2927, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.25", "min_intra_species_ani": "96.25", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009811595.1", "gtdb_species": "s__Streptomyces libani", "ani": 89.5707, "matched_fragments": 2081, "total_fragments": 2927, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.04", "min_intra_species_ani": "96.45", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.86", "num_clustered_genomes": 12, "status": "-" }, { "accession": "GCF_009811555.1", "gtdb_species": "s__Streptomyces caniferus", "ani": 89.107, "matched_fragments": 2037, "total_fragments": 2927, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008704855.1", "gtdb_species": "s__Streptomyces platensis", "ani": 89.0868, "matched_fragments": 1971, "total_fragments": 2927, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.55", "min_intra_species_ani": "95.21", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.87", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_009811635.1", "gtdb_species": "s__Streptomyces tubercidicus", "ani": 88.9705, "matched_fragments": 1836, "total_fragments": 2927, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009176265.1", "gtdb_species": "s__Streptomyces angustmyceticus", "ani": 88.8794, "matched_fragments": 1866, "total_fragments": 2927, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.96", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900187385.1", "gtdb_species": "s__Streptomyces sp900187385", "ani": 88.8676, "matched_fragments": 1873, "total_fragments": 2927, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.81", "min_intra_species_ani": "99.51", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.96", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_004122735.1", "gtdb_species": "s__Streptomyces sioyaensis", "ani": 88.8369, "matched_fragments": 1766, "total_fragments": 2927, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.26", "min_intra_species_ani": "95.36", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.84", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_004125265.1", "gtdb_species": "s__Streptomyces lydicus_C", "ani": 88.7712, "matched_fragments": 1875, "total_fragments": 2927, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000717345.1", "gtdb_species": "s__Streptomyces lydicus", "ani": 88.5874, "matched_fragments": 1977, "total_fragments": 2927, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.39", "min_intra_species_ani": "95.38", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.89", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_014646275.1", "gtdb_species": "s__Streptomyces kronopolitis", "ani": 88.2689, "matched_fragments": 1765, "total_fragments": 2927, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.201, "cell_length": -0.05, "doubling_h": 0.103, "growth_tmp": 27.757, "optimum_tmp": 29.036, "optimum_ph": 7.341, "genome_size": 8292419.302, "gc_content": 71.543, "coding_genes": 7141.289, "rRNA16S_genes": 6.155, "tRNA_genes": 67.804, "gram_stain": 0.998, "sporulation": 0.958, "motility": 0.049, "range_salinity": 0.666, "facultative_respiration": 0.0, "anaerobic_respiration": 0.005, "aerobic_respiration": 0.994, "mesophilic_range_tmp": 0.98, "thermophilic_range_tmp": 0.019, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.208, "coccus_cell_shape": 0.032, "filament_cell_shape": 0.582, "coccobacillus_cell_shape": 0.098, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.076 }, "_genome_taxon": [ "Streptomyces", "inhibens" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }