{ "type": "genome", "identifier": "GCF_003403015.1", "organism": "Fulvimarina endophytica", "title": "Fulvimarina endophytica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Research Center for Medicine & Biology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003403015.1", "bioproject": "PRJNA224116", "biosample": "SAMN09780445", "wgs_master": "QURL00000000.1", "refseq_category": "reference genome", "taxid": "2293836", "species_taxid": "2293836", "organism_name": "Fulvimarina endophytica", "infraspecific_name": "strain=85", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/18", "asm_name": "ASM340301v1", "asm_submitter": "Research Center for Medicine & Biology", "gbrs_paired_asm": "GCA_003403015.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/403/015/GCF_003403015.1_ASM340301v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4372088", "genome_size_ungapped": "4372088", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "28", "contig_count": "28", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003403015.1-RS_2024_05_01", "annotation_date": "2024-05-01", "total_gene_count": "3959", "protein_coding_gene_count": "3854", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-18", "dateModified": "2018-08-18", "datePublished": "2018-08-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Fulvimarina endophytica" ], "sample_taxid": [ "2293836" ], "sample_host_organism": [ "Sonneratia caseolaris" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Guangxi" ], "sample_host_location_id": [], "data_size": "1.197 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4372088", "Number of Sequences": "28", "Longest Sequences (bp)": "744482", "N50 (bp)": "586967", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.4", "Number of CDSs": "3938", "Average Protein Length": "322.9", "Coding Ratio (%)": "87.2", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Fulvimarina endophytica", "strain": "strain=85", "accession": "GCA_003403015.1", "taxid": 2293836, "species_taxid": 2293836, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1440, "total_fragments": 1442, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Fulvimarina pelagi", "strain": "strain=HTCC2506", "accession": "GCA_000153705.1", "taxid": 217511, "species_taxid": 217511, "relation_to_type": "type", "validated": true, "ani": 79.8184, "matched_fragments": 617, "total_fragments": 1442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimarina pelagi", "strain": "strain=DSM 15513", "accession": "GCA_001463845.1", "taxid": 217511, "species_taxid": 217511, "relation_to_type": "type", "validated": true, "ani": 79.7625, "matched_fragments": 618, "total_fragments": 1442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiella endophytica", "strain": "strain=CBS5Q-3", "accession": "GCA_004519335.1", "taxid": 2558362, "species_taxid": 2558362, "relation_to_type": "type", "validated": true, "ani": 79.4783, "matched_fragments": 615, "total_fragments": 1442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantimonas manganoxydans", "strain": "strain=SI85-9A1", "accession": "GCA_000153465.1", "taxid": 651183, "species_taxid": 651183, "relation_to_type": "type", "validated": true, "ani": 79.429, "matched_fragments": 575, "total_fragments": 1442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantimonas manganoxydans", "strain": "strain=DSM 21871", "accession": "GCA_001463865.1", "taxid": 651183, "species_taxid": 651183, "relation_to_type": "type", "validated": true, "ani": 79.3909, "matched_fragments": 574, "total_fragments": 1442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantimonas endophytica", "strain": "strain=KCTC 52296", "accession": "GCA_024105745.1", "taxid": 1522175, "species_taxid": 1522175, "relation_to_type": "type", "validated": true, "ani": 79.245, "matched_fragments": 559, "total_fragments": 1442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantimonas aggregata", "strain": "strain=KCTC 52919", "accession": "GCA_010500835.1", "taxid": 2047720, "species_taxid": 2047720, "relation_to_type": "type", "validated": true, "ani": 79.236, "matched_fragments": 556, "total_fragments": 1442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiella sonneratiae", "strain": "strain=MQZ13P-4", "accession": "GCA_017353515.1", "taxid": 2816856, "species_taxid": 2816856, "relation_to_type": "type", "validated": true, "ani": 79.2209, "matched_fragments": 635, "total_fragments": 1442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantimonas endophytica", "strain": "strain=DSM 103570", "accession": "GCA_014196845.1", "taxid": 1522175, "species_taxid": 1522175, "relation_to_type": "type", "validated": true, "ani": 79.2207, "matched_fragments": 563, "total_fragments": 1442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiella pacifica", "strain": "strain=40Bstr34", "accession": "GCA_010500815.1", "taxid": 2696469, "species_taxid": 2696469, "relation_to_type": "type", "validated": true, "ani": 79.1565, "matched_fragments": 601, "total_fragments": 1442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantimonas marina", "strain": "strain=SW136", "accession": "GCA_017183135.1", "taxid": 2780508, "species_taxid": 2780508, "relation_to_type": "type", "validated": true, "ani": 78.4043, "matched_fragments": 439, "total_fragments": 1442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella pollutisoli", "strain": "strain=KCTC 52677", "accession": "GCA_024609765.1", "taxid": 2250594, "species_taxid": 2250594, "relation_to_type": "type", "validated": true, "ani": 77.9214, "matched_fragments": 377, "total_fragments": 1442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium onobrychidis", "strain": "strain=OM4", "accession": "GCA_024707545.1", "taxid": 2775404, "species_taxid": 2775404, "relation_to_type": "type", "validated": true, "ani": 77.3664, "matched_fragments": 303, "total_fragments": 1442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagovum pacificum", "strain": "strain=SM1903", "accession": "GCA_006363825.1", "taxid": 2588711, "species_taxid": 2588711, "relation_to_type": "type", "validated": true, "ani": 76.5079, "matched_fragments": 129, "total_fragments": 1442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinirhodobacter ferrireducens", "strain": "strain=CCTCC AB2012026", "accession": "GCA_004022265.1", "taxid": 1215032, "species_taxid": 1215032, "relation_to_type": "type", "validated": true, "ani": 76.4476, "matched_fragments": 169, "total_fragments": 1442, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinirhodobacter hankyongi", "strain": "strain=BO-81", "accession": "GCA_003664585.1", "taxid": 2294033, "species_taxid": 2294033, 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