{ "type": "genome", "identifier": "GCF_003410055.1", "organism": "Wenzhouxiangella sediminis", "title": "Wenzhouxiangella sediminis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "ZheJiang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003410055.1", "bioproject": "PRJNA224116", "biosample": "SAMN09810244", "wgs_master": "QUZK00000000.1", "refseq_category": "reference genome", "taxid": "1792836", "species_taxid": "1792836", "organism_name": "Wenzhouxiangella sediminis", "infraspecific_name": "strain=XDB06", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/20", "asm_name": "ASM341005v1", "asm_submitter": "ZheJiang University", "gbrs_paired_asm": "GCA_003410055.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/410/055/GCF_003410055.1_ASM341005v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3506010", "genome_size_ungapped": "3506010", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "54", "contig_count": "54", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003410055.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "3067", "protein_coding_gene_count": "2990", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-20", "dateModified": "2018-08-20", "datePublished": "2018-08-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Wenzhouxiangella sediminis" ], "sample_taxid": [ "1792836" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Shandong" ], "sample_host_location_id": [], "data_size": "0.970 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3506010", "Number of Sequences": "54", "Longest Sequences (bp)": "217785", "N50 (bp)": "136135", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.4", "Number of CDSs": "2998", "Average Protein Length": "353.8", "Coding Ratio (%)": "90.8", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Wenzhouxiangella sediminis", "strain": "strain=XDB06", "accession": "GCA_003410055.1", "taxid": 1792836, "species_taxid": 1792836, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1138, "total_fragments": 1139, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Wenzhouxiangella marina", "strain": "strain=DSM 103414", "accession": "GCA_014203035.1", "taxid": 1579979, "species_taxid": 1579979, "relation_to_type": "type", "validated": true, "ani": 79.0456, "matched_fragments": 411, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wenzhouxiangella marina", "strain": "strain=KCTC 42284", "accession": "GCA_001187785.1", "taxid": 1579979, "species_taxid": 1579979, "relation_to_type": "type", "validated": true, "ani": 79.0031, "matched_fragments": 413, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas lumbrici", "strain": "strain=1.1416", "accession": "GCA_006476065.1", "taxid": 2559601, "species_taxid": 2559601, "relation_to_type": "type", "validated": true, "ani": 77.3454, "matched_fragments": 168, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oleiagrimonas soli", "strain": "strain=DSM 107085", "accession": "GCA_014201555.1", "taxid": 1543381, "species_taxid": 1543381, "relation_to_type": "type", "validated": true, "ani": 77.2018, "matched_fragments": 174, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyella solisilvae", "strain": "strain=DHG54", "accession": "GCA_003351225.1", "taxid": 1920168, "species_taxid": 1920168, "relation_to_type": "type", "validated": true, "ani": 77.1729, "matched_fragments": 136, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimonas soli", "strain": "strain=DSM 14263", "accession": "GCA_003148905.1", "taxid": 155197, "species_taxid": 155197, "relation_to_type": "type", "validated": true, "ani": 77.1375, "matched_fragments": 211, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas malthae", "strain": "strain=CC-JY-1", "accession": "GCA_000747075.1", "taxid": 354197, "species_taxid": 354197, "relation_to_type": "type", "validated": true, "ani": 77.1273, "matched_fragments": 218, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas caeni", "strain": "strain=z29", "accession": "GCA_003024235.1", "taxid": 2058085, "species_taxid": 2058085, "relation_to_type": "type", "validated": true, "ani": 77.1008, "matched_fragments": 222, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oleiagrimonas soli", "strain": "strain=3.5X", "accession": "GCA_000761445.1", "taxid": 1543381, "species_taxid": 1543381, "relation_to_type": "type", "validated": true, "ani": 77.0926, "matched_fragments": 167, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium thermophilum", "strain": "strain=KCTC 32020", "accession": "GCA_007923255.1", "taxid": 1169913, "species_taxid": 1169913, 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1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalbus denitrificans", "strain": "strain=DSM 26407", "accession": "GCA_003337735.1", "taxid": 547122, "species_taxid": 547122, "relation_to_type": "type", "validated": true, "ani": 76.655, "matched_fragments": 128, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinisphaera halophila", "strain": "strain=YIM 95161", "accession": "GCA_003732545.1", "taxid": 1304158, "species_taxid": 1304158, "relation_to_type": "type", "validated": true, "ani": 76.5557, "matched_fragments": 133, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinisphaera orenii", "strain": "strain=MK-B5", "accession": "GCA_003788635.1", "taxid": 856731, "species_taxid": 856731, "relation_to_type": "type", "validated": true, "ani": 76.5136, "matched_fragments": 143, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, 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"coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Wenzhouxiangella", "sediminis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }