{ "type": "genome", "identifier": "GCF_003412465.1", "organism": "Chitinophaga silvisoli", "title": "Chitinophaga silvisoli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "guangdong institute of microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003412465.1", "bioproject": "PRJNA224116", "biosample": "SAMN09748249", "wgs_master": "QTJV00000000.1", "refseq_category": "reference genome", "taxid": "2291814", "species_taxid": "2291814", "organism_name": "Chitinophaga silvisoli", "infraspecific_name": "strain=K20C18050901", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/21", "asm_name": "ASM341246v1", "asm_submitter": "guangdong institute of microbiology", "gbrs_paired_asm": "GCA_003412465.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/412/465/GCF_003412465.1_ASM341246v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8355436", "genome_size_ungapped": "8355436", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "75", "contig_count": "75", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003412465.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "6841", "protein_coding_gene_count": "6742", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-21", "dateModified": "2018-08-21", "datePublished": "2018-08-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Chitinophaga silvisoli" ], "sample_taxid": [ "2291814" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"matched_fragments": 2748, "total_fragments": 2753, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chitinophaga sancti", "strain": "strain=DSM 784", "accession": "GCA_900119105.1", "taxid": 1004, "species_taxid": 1004, "relation_to_type": "type", "validated": true, "ani": 86.7588, "matched_fragments": 1998, "total_fragments": 2753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga ginsengisoli", "strain": "strain=DSM 18107", "accession": "GCA_003014595.1", "taxid": 363837, "species_taxid": 363837, "relation_to_type": "type", "validated": true, "ani": 79.0245, "matched_fragments": 644, "total_fragments": 2753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga filiformis", "strain": "strain=DSM 527", "accession": "GCA_900102545.1", "taxid": 104663, "species_taxid": 104663, "relation_to_type": "type", "validated": true, "ani": 78.9242, "matched_fragments": 619, "total_fragments": 2753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga rhizophila", "strain": "strain=B61", "accession": "GCA_019492185.1", "taxid": 2866212, "species_taxid": 2866212, "relation_to_type": "type", "validated": true, "ani": 78.8613, "matched_fragments": 516, "total_fragments": 2753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga pinensis", "strain": "strain=DSM 2588", "accession": "GCA_000024005.1", "taxid": 79329, "species_taxid": 79329, "relation_to_type": "type", "validated": true, "ani": 78.801, "matched_fragments": 676, "total_fragments": 2753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga tropicalis", "strain": "strain=ysch24", "accession": "GCA_009758205.1", "taxid": 2683588, "species_taxid": 2683588, "relation_to_type": "type", "validated": true, "ani": 78.6033, "matched_fragments": 639, "total_fragments": 2753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga oryziterrae", "strain": "strain=JCM 16595", "accession": "GCA_009758125.1", "taxid": 1031224, "species_taxid": 1031224, "relation_to_type": "type", "validated": true, "ani": 78.4676, "matched_fragments": 624, "total_fragments": 2753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga hostae", "strain": "strain=2R12", "accession": "GCA_018224885.1", "taxid": 2831022, "species_taxid": 2831022, "relation_to_type": "type", "validated": true, "ani": 77.6354, "matched_fragments": 281, "total_fragments": 2753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga dinghuensis", "strain": "strain=DSM 29821", "accession": "GCA_003259435.1", "taxid": 1539050, "species_taxid": 1539050, "relation_to_type": "type", "validated": true, "ani": 77.5964, "matched_fragments": 275, "total_fragments": 2753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga solisilvae", "strain": 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"d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Chitinophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001975825.1", "gtdb_species": "s__Chitinophaga sp001975825", "ani": 85.6927, "matched_fragments": 1936, "total_fragments": 2753, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Chitinophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.88", "min_intra_species_ani": "98.88", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.308, "cell_length": 0.473, "doubling_h": null, "growth_tmp": 28.733, "optimum_tmp": 26.937, "optimum_ph": 7.0, "genome_size": 7579043.287, 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