{ "type": "genome", "identifier": "GCF_003415655.1", "organism": "Vibrio maerlii", "title": "Vibrio maerlii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Federal University of Rio de Janeiro", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003415655.1", "bioproject": "PRJNA224116", "biosample": "SAMN09437435", "wgs_master": "QRHC00000000.1", "refseq_category": "reference genome", "taxid": "2231648", "species_taxid": "2231648", "organism_name": "Vibrio maerlii", "infraspecific_name": "strain=G62", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/22", "asm_name": "ASM341565v1", "asm_submitter": "Federal University of Rio de Janeiro", "gbrs_paired_asm": "GCA_003415655.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/415/655/GCF_003415655.1_ASM341565v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4758008", "genome_size_ungapped": "4758008", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "50", "contig_count": "50", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003415655.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "4374", "protein_coding_gene_count": "4193", "non_coding_gene_count": "147", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-22", "dateModified": "2018-08-22", "datePublished": "2018-08-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio maerlii" ], "sample_taxid": [ "2231648" ], "sample_host_organism": [ "rhodolith" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Abrolhos" ], "sample_host_location_id": [], "data_size": "1.358 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4758008", "Number of Sequences": "50", "Longest Sequences (bp)": "735445", "N50 (bp)": "369373", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.5", "Number of CDSs": "4210", "Average Protein Length": "324.9", "Coding Ratio (%)": "86.2", "Number of rRNAs": "11", "Number of tRNAs": "107", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio maerlii", "strain": "strain=G62", "accession": "GCA_003415655.1", "taxid": 2231648, "species_taxid": 2231648, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1567, "total_fragments": 1567, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio fortis", "strain": "strain=LMG 21557", "accession": "GCA_024347475.1", "taxid": 212667, "species_taxid": 212667, "relation_to_type": "type", "validated": true, "ani": 81.1368, "matched_fragments": 450, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio chagasii", "strain": "strain=LMG 21353", "accession": "GCA_005281815.1", "taxid": 170679, "species_taxid": 170679, "relation_to_type": "suspected-type", "validated": true, "ani": 80.9078, "matched_fragments": 417, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio chagasii", "strain": "strain=LMG 21353", "accession": "GCA_024347355.1", "taxid": 170679, "species_taxid": 170679, "relation_to_type": "suspected-type", "validated": true, "ani": 80.8214, "matched_fragments": 423, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio pelagius", "strain": "strain=ATCC 25916", "accession": "GCA_024347575.1", "taxid": 28169, "species_taxid": 28169, "relation_to_type": "type", "validated": true, "ani": 80.7345, "matched_fragments": 445, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio aquaticus", "strain": "strain=BEI207", "accession": "GCA_003970385.1", "taxid": 2496559, "species_taxid": 2496559, "relation_to_type": "type", "validated": true, "ani": 80.7111, "matched_fragments": 406, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio mexicanus", "strain": "strain=CAIM 1540", "accession": "GCA_001012815.1", "taxid": 1004326, "species_taxid": 1004326, "relation_to_type": "type", "validated": true, "ani": 80.5416, "matched_fragments": 361, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio hyugaensis", "strain": "strain=090810a", "accession": "GCA_002906655.1", "taxid": 1534743, "species_taxid": 1534743, "relation_to_type": "type", "validated": true, "ani": 80.3354, "matched_fragments": 411, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio hyugaensis", "strain": "strain=090810a", "accession": "GCA_000818435.1", "taxid": 1534743, "species_taxid": 1534743, "relation_to_type": "type", "validated": true, "ani": 80.2783, "matched_fragments": 411, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio gigantis", "strain": "strain=LMG 22741", "accession": "GCA_024347515.1", "taxid": 296199, "species_taxid": 296199, "relation_to_type": "type", "validated": true, "ani": 80.2652, "matched_fragments": 434, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio gigantis", "strain": "strain=LGP 13", "accession": "GCA_002156475.1", "taxid": 296199, "species_taxid": 296199, "relation_to_type": "type", "validated": true, "ani": 80.1911, "matched_fragments": 427, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio campbellii", "strain": "strain=CAIM 519", "accession": "GCA_000334195.1", "taxid": 680, "species_taxid": 680, "relation_to_type": "type", "validated": true, "ani": 80.1726, "matched_fragments": 404, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio atlanticus", "strain": "strain=CECT 7223", "accession": "GCA_024347315.1", "taxid": 693153, "species_taxid": 693153, "relation_to_type": "type", "validated": true, "ani": 80.0874, "matched_fragments": 433, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio europaeus", "strain": "strain=PP-638", "accession": "GCA_001695575.1", "taxid": 300876, "species_taxid": 300876, "relation_to_type": "type", "validated": true, "ani": 80.0831, "matched_fragments": 411, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio ponticus", "strain": "strain=DSM 16217", "accession": "GCA_009938225.1", "taxid": 265668, "species_taxid": 265668, "relation_to_type": "type", "validated": true, "ani": 79.9507, "matched_fragments": 360, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio panuliri", "strain": "strain=JCM 19500", "accession": "GCA_009938205.1", "taxid": 1381081, "species_taxid": 1381081, "relation_to_type": "type", "validated": true, "ani": 79.8107, "matched_fragments": 341, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio panuliri", "strain": "strain=LBS 2", "accession": "GCA_008830195.1", "taxid": 1381081, "species_taxid": 1381081, "relation_to_type": "type", "validated": true, "ani": 79.6289, "matched_fragments": 344, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio scophthalmi", "strain": "strain=LMG 19158", "accession": "GCA_000222585.2", "taxid": 45658, "species_taxid": 45658, "relation_to_type": "type", "validated": true, "ani": 79.4067, "matched_fragments": 341, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio diazotrophicus", "strain": "strain=NBRC 103148", "accession": "GCA_000740015.1", "taxid": 685, "species_taxid": 685, "relation_to_type": "type", "validated": true, "ani": 79.2035, "matched_fragments": 299, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio hippocampi", "strain": "strain=CECT 8226", "accession": "GCA_921292975.1", "taxid": 654686, "species_taxid": 654686, "relation_to_type": "type", "validated": true, "ani": 79.0109, "matched_fragments": 269, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio fluvialis", "strain": "strain=NCTC11327", "accession": 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maerlii", "ani": 100.0, "matched_fragments": 1567, "total_fragments": 1567, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_005281815.1", "gtdb_species": "s__Vibrio chagasii", "ani": 80.898, "matched_fragments": 416, "total_fragments": 1567, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.30", "min_intra_species_ani": "95.30", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.82", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCF_002954585.1", "gtdb_species": "s__Vibrio chagasii_A", "ani": 80.8873, "matched_fragments": 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