{ "type": "genome", "identifier": "GCF_003416765.1", "organism": "Paratractidigestivibacter faecalis", "title": "Paratractidigestivibacter faecalis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea Research Institute of Bioscience and Biotechnology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003416765.1", "bioproject": "PRJNA224116", "biosample": "SAMN09762458", "wgs_master": "QSNG00000000.1", "refseq_category": "reference genome", "taxid": "2292441", "species_taxid": "2292441", "organism_name": "Paratractidigestivibacter faecalis", "infraspecific_name": "strain=KCTC 15699", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/22", "asm_name": "ASM341676v1", "asm_submitter": "Korea Research Institute of Bioscience and Biotechnology", "gbrs_paired_asm": "GCA_003416765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/416/765/GCF_003416765.1_ASM341676v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2107986", "genome_size_ungapped": "2107986", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003416765.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "1920", "protein_coding_gene_count": "1829", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-22", "dateModified": "2018-08-22", "datePublished": "2018-08-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Paratractidigestivibacter faecalis" ], "sample_taxid": [ "2292441" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.579 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2107986", "Number of Sequences": "6", "Longest Sequences (bp)": "2085387", "N50 (bp)": "2085387", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.5", "Number of CDSs": "1869", "Average Protein Length": "329.7", "Coding Ratio (%)": "87.7", "Number of rRNAs": "11", "Number of tRNAs": "53", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thermophilibacter provencensis", "strain": "strain=Marseille-P2912", "accession": "GCA_900128445.1", "taxid": 1852386, 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"matched_fragments": 234, "total_fragments": 700, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enorma burkinafasonensis", "strain": "strain=Marseille-P9525", "accession": "GCA_902150035.1", "taxid": 2590867, "species_taxid": 2590867, "relation_to_type": "type", "validated": true, "ani": 79.5846, "matched_fragments": 223, "total_fragments": 700, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella vaginalis", "strain": "strain=Marseille-P2666", "accession": "GCA_900176655.1", "taxid": 1870987, "species_taxid": 1870987, "relation_to_type": "type", "validated": true, "ani": 78.9471, "matched_fragments": 162, "total_fragments": 700, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium vitaeruminis", "strain": "strain=DSM 20294", "accession": "GCA_000550805.1", "taxid": 38305, "species_taxid": 38305, "relation_to_type": "type", "validated": true, "ani": 76.0552, "matched_fragments": 57, 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null, "spiral_cell_shape": null }, "_genome_taxon": [ "Paratractidigestivibacter", "faecalis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }