{
    "type": "genome",
    "identifier": "GCF_003416885.1",
    "organism": "Cognatiluteimonas weifangensis",
    "title": "Cognatiluteimonas weifangensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Nanjing Agricultural University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003416885.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN09859306",
        "wgs_master": "QVPD00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2303539",
        "species_taxid": "2303539",
        "organism_name": "Cognatiluteimonas weifangensis",
        "infraspecific_name": "strain=WF-2",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/08/22",
        "asm_name": "ASM341688v1",
        "asm_submitter": "Nanjing Agricultural University",
        "gbrs_paired_asm": "GCA_003416885.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/416/885/GCF_003416885.1_ASM341688v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2764764",
        "genome_size_ungapped": "2764576",
        "gc_percent": "71.000000",
        "replicon_count": "0",
        "scaffold_count": "45",
        "contig_count": "45",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003416885.1-RS_2024_05_06",
        "annotation_date": "2024-05-06",
        "total_gene_count": "2548",
        "protein_coding_gene_count": "2467",
        "non_coding_gene_count": "52",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-08-22",
    "dateModified": "2018-08-22",
    "datePublished": "2018-08-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Cognatiluteimonas weifangensis"
        ],
        "sample_taxid": [
            "2303539"
        ],
        "sample_host_organism": [
            "not collected"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not collected"
        ],
        "sample_host_location_id": [],
        "data_size": "0.736 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2764764",
        "Number of Sequences": "45",
        "Longest Sequences (bp)": "373812",
        "N50 (bp)": "253131",
        "Gap Ratio (%)": "0.007053",
        "GCcontent (%)": "70.9",
        "Number of CDSs": "2525",
        "Average Protein Length": "321.5",
        "Coding Ratio (%)": "88.1",
        "Number of rRNAs": "3",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Luteimonas weifangensis",
                "strain": "strain=WF-2",
                "accession": "GCA_003416885.1",
                "taxid": 2303539,
                "species_taxid": 2303539,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 904,
                "total_fragments": 905,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Luteimonas lumbrici",
                "strain": "strain=1.1416",
                "accession": "GCA_006476065.1",
                "taxid": 2559601,
                "species_taxid": 2559601,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.6991,
                "matched_fragments": 606,
                "total_fragments": 905,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vulcaniibacterium gelatinicum",
                "strain": "strain=R-5-52-3",
                "accession": "GCA_008033445.1",
                "taxid": 2598725,
                "species_taxid": 2598725,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.918,
                "matched_fragments": 591,
                "total_fragments": 905,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vulcaniibacterium tengchongense",
                "strain": "strain=DSM 25623",
                "accession": "GCA_003814555.1",
                "taxid": 1273429,
                "species_taxid": 1273429,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.5307,
                "matched_fragments": 626,
                "total_fragments": 905,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vulcaniibacterium tengchongense",
                "strain": "strain=YIM 77520",
                "accession": "GCA_008033455.1",
                "taxid": 1273429,
                "species_taxid": 1273429,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.4959,
                "matched_fragments": 593,
                "total_fragments": 905,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas mephitis",
                "strain": "strain=DSM 12574",
                "accession": "GCA_000422305.1",
                "taxid": 83615,
                "species_taxid": 83615,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.1612,
                "matched_fragments": 622,
                "total_fragments": 905,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysobacter arseniciresistens",
                "strain": "strain=ZS79",
                "accession": "GCA_000768335.1",
                "taxid": 1385522,
                "species_taxid": 1385522,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.0486,
                "matched_fragments": 574,
                "total_fragments": 905,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas marina",
                "strain": "strain=FR1330",
                "accession": "GCA_007859325.1",
                "taxid": 488485,
                "species_taxid": 488485,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.9838,
                "matched_fragments": 608,
                "total_fragments": 905,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas aquatica",
                "strain": "strain=RIB1-20",
                "accession": "GCA_022662575.1",
                "taxid": 450364,
                "species_taxid": 450364,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.7812,
                "matched_fragments": 609,
                "total_fragments": 905,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas padinae",
                "strain": "strain=KCTC 52403",
                "accession": "GCA_014652935.1",
                "taxid": 1714359,
                "species_taxid": 1714359,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.6713,
                "matched_fragments": 554,
                "total_fragments": 905,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoxanthomonas jiangsuensis",
                "strain": "strain=DSM 22398",
                "accession": "GCA_010093185.1",
                "taxid": 619688,
                "species_taxid": 619688,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.3279,
                "matched_fragments": 567,
                "total_fragments": 905,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoxanthomonas sangjuensis",
                "strain": "strain=DSM 28345",
                "accession": "GCA_010211755.1",
                "taxid": 1503750,
                "species_taxid": 1503750,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.2324,
                "matched_fragments": 579,
                "total_fragments": 905,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas salinisoli",
                "strain": "strain=SJ-92",
                "accession": "GCA_013425525.1",
                "taxid": 2752307,
                "species_taxid": 2752307,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0096,
                "matched_fragments": 614,
                "total_fragments": 905,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas viscosa",
                "strain": "strain=XBU10",
                "accession": "GCA_008244685.1",
                "taxid": 1132694,
                "species_taxid": 1132694,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9559,
                "matched_fragments": 621,
                "total_fragments": 905,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas gilva",
                "strain": "strain=H23",
                "accession": "GCA_005239095.1",
                "taxid": 2572684,
                "species_taxid": 2572684,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9098,
                "matched_fragments": 566,
                "total_fragments": 905,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas cucumeris",
                "strain": "strain=CGMCC 1.10821",
                "accession": "GCA_007830035.1",
                "taxid": 985012,
                "species_taxid": 985012,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.8507,
                "matched_fragments": 602,
                "total_fragments": 905,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysobacter luteus",
                "strain": "strain=CECT 30171",
                "accession": "GCA_907164845.1",
                "taxid": 2822368,
                "species_taxid": 2822368,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.6516,
                "matched_fragments": 551,
                "total_fragments": 905,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas aestuarii",
                "strain": "strain=B9",
                "accession": "GCA_004357985.1",
                "taxid": 453837,
                "species_taxid": 453837,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.3909,
                "matched_fragments": 528,
                "total_fragments": 905,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysobacter solisilvae",
                "strain": "strain=R19",
                "accession": "GCA_016613535.2",
                "taxid": 2763317,
                "species_taxid": 2763317,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2285,
                "matched_fragments": 589,
                "total_fragments": 905,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoxanthomonas gei",
                "strain": "strain=KCTC 32298",
                "accession": "GCA_010119615.1",
                "taxid": 1383030,
                "species_taxid": 1383030,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.5158,
                "matched_fragments": 486,
                "total_fragments": 905,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003416885.1",
                "gtdb_species": "s__Luteimonas_B sp003416885",
                "ani": 100.0,
                "matched_fragments": 904,
                "total_fragments": 905,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_006476065.1",
                "gtdb_species": "s__Luteimonas_B lumbrici",
                "ani": 84.6956,
                "matched_fragments": 606,
                "total_fragments": 905,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004297225.1",
                "gtdb_species": "s__Luteimonas_B sp004297225",
                "ani": 84.1622,
                "matched_fragments": 541,
                "total_fragments": 905,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008033445.1",
                "gtdb_species": "s__Vulcaniibacterium_B gelatinicum",
                "ani": 83.9307,
                "matched_fragments": 592,
                "total_fragments": 905,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Vulcaniibacterium_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003814555.1",
                "gtdb_species": "s__Lysobacter tengchongensis",
                "ani": 83.5027,
                "matched_fragments": 628,
                "total_fragments": 905,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000422305.1",
                "gtdb_species": "s__Luteimonas mephitis",
                "ani": 83.1782,
                "matched_fragments": 620,
                "total_fragments": 905,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007859325.1",
                "gtdb_species": "s__Luteimonas marina",
                "ani": 83.0703,
                "matched_fragments": 601,
                "total_fragments": 905,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000768335.1",
                "gtdb_species": "s__Lysobacter arseniciresistens",
                "ani": 83.0246,
                "matched_fragments": 577,
                "total_fragments": 905,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_011320095.1",
                "gtdb_species": "s__Luteimonas_B telluris",
                "ani": 82.8221,
                "matched_fragments": 580,
                "total_fragments": 905,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013362405.1",
                "gtdb_species": "s__JABFWF01 sp013362405",
                "ani": 82.7404,
                "matched_fragments": 489,
                "total_fragments": 905,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__JABFWF01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014395425.1",
                "gtdb_species": "s__Thermomonas brevis",
                "ani": 82.7157,
                "matched_fragments": 605,
                "total_fragments": 905,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Thermomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000472505.1",
                "gtdb_species": "s__Luteimonas sp000472505",
                "ani": 82.5288,
                "matched_fragments": 576,
                "total_fragments": 905,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.95",
                "min_intra_species_ani": "99.95",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003586305.1",
                "gtdb_species": "s__Lysobacter tabacisoli",
                "ani": 82.3146,
                "matched_fragments": 614,
                "total_fragments": 905,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017302075.1",
                "gtdb_species": "s__Thermomonas sp017302075",
                "ani": 82.2423,
                "matched_fragments": 478,
                "total_fragments": 905,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Thermomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008312895.1",
                "gtdb_species": "s__Luteimonas sp008312895",
                "ani": 82.23,
                "matched_fragments": 616,
                "total_fragments": 905,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_010211755.1",
                "gtdb_species": "s__Pseudoxanthomonas_A sangjuensis",
                "ani": 82.2271,
                "matched_fragments": 580,
                "total_fragments": 905,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Pseudoxanthomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001014645.1",
                "gtdb_species": "s__Luteimonas sp001014645",
                "ani": 81.1637,
                "matched_fragments": 579,
                "total_fragments": 905,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Luteimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Cognatiluteimonas",
        "weifangensis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}