{ "type": "genome", "identifier": "GCF_003419895.1", "organism": "Chitinophaga silvatica", "title": "Chitinophaga silvatica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangdong Institute of Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003419895.1", "bioproject": "PRJNA224116", "biosample": "SAMN09694782", "wgs_master": "QPMM00000000.1", "refseq_category": "reference genome", "taxid": "2282649", "species_taxid": "2282649", "organism_name": "Chitinophaga silvatica", "infraspecific_name": "strain=GDMCC 1.1288", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/22", "asm_name": "ASM341989v1", "asm_submitter": "Guangdong Institute of Microbiology", "gbrs_paired_asm": "GCA_003419895.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/419/895/GCF_003419895.1_ASM341989v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6810585", "genome_size_ungapped": "6810585", "gc_percent": "40.000000", "replicon_count": "0", "scaffold_count": "25", "contig_count": "25", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003419895.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "5447", "protein_coding_gene_count": "5364", "non_coding_gene_count": "73", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-22", "dateModified": "2018-08-22", "datePublished": "2018-08-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Chitinophaga silvatica" ], "sample_taxid": [ "2282649" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.926 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6810585", "Number of Sequences": "25", "Longest Sequences (bp)": "1119860", "N50 (bp)": "449664", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.8", "Number of CDSs": "5346", "Average Protein Length": "372.9", "Coding Ratio (%)": "87.8", "Number of rRNAs": "3", "Number of tRNAs": "66", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chitinophaga silvatica", "strain": "strain=GDMCC 1.1288", "accession": "GCA_003419895.1", "taxid": 2282649, "species_taxid": 2282649, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2256, "total_fragments": 2257, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chitinophaga terrae (ex Kim and Jung 2007)", "strain": "strain=DSM 23920", "accession": "GCA_900107795.1", "taxid": 408074, "species_taxid": 408074, "relation_to_type": "type", "validated": true, "ani": 80.6038, "matched_fragments": 914, "total_fragments": 2257, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga ginsengisegetis", "strain": "strain=DSM 18108", "accession": "GCA_900168065.1", "taxid": 393003, "species_taxid": 393003, "relation_to_type": "type", "validated": true, "ani": 79.3217, "matched_fragments": 630, "total_fragments": 2257, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga arvensicola", "strain": "strain=DSM 3695", "accession": "GCA_900110835.1", "taxid": 29529, "species_taxid": 29529, "relation_to_type": "type", "validated": true, "ani": 79.2341, "matched_fragments": 658, "total_fragments": 2257, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga hostae", "strain": "strain=2R12", "accession": "GCA_018224885.1", "taxid": 2831022, "species_taxid": 2831022, "relation_to_type": "type", "validated": true, "ani": 79.2239, "matched_fragments": 642, "total_fragments": 2257, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga niastensis", "strain": "strain=DSM 24859", "accession": "GCA_003014755.1", "taxid": 536980, "species_taxid": 536980, "relation_to_type": "type", "validated": true, "ani": 78.9961, "matched_fragments": 583, "total_fragments": 2257, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga dinghuensis", "strain": "strain=DSM 29821", "accession": "GCA_003259435.1", "taxid": 1539050, "species_taxid": 1539050, "relation_to_type": "type", "validated": true, "ani": 78.7971, "matched_fragments": 461, "total_fragments": 2257, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga flava", "strain": "strain=GDMCC 1.1325", "accession": "GCA_003308995.1", "taxid": 2259036, "species_taxid": 2259036, "relation_to_type": "type", "validated": true, "ani": 78.5972, "matched_fragments": 476, "total_fragments": 2257, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga eiseniae", "strain": "strain=DSM 22224", "accession": "GCA_900167135.1", "taxid": 634771, "species_taxid": 634771, "relation_to_type": "type", "validated": true, "ani": 78.4643, "matched_fragments": 393, "total_fragments": 2257, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga qingshengii", "strain": "strain=JCM 30026", "accession": "GCA_014529935.1", "taxid": 1569794, "species_taxid": 1569794, "relation_to_type": "type", "validated": true, "ani": 78.2596, "matched_fragments": 474, "total_fragments": 2257, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga tropicalis", 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