{ "type": "genome", "identifier": "GCF_003419945.1", "organism": "Micromonospora craniellae", "title": "Micromonospora craniellae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ren Ji Hospital School of Medicine, Shanghai Jiao Tong University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003419945.1", "bioproject": "PRJNA224116", "biosample": "SAMN09786811", "wgs_master": "QVFU00000000.1", "refseq_category": "na", "taxid": "2294034", "species_taxid": "2294034", "organism_name": "Micromonospora craniellae", "infraspecific_name": "strain=LHW63014", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/22", "asm_name": "ASM341994v1", "asm_submitter": "Ren Ji Hospital School of Medicine, Shanghai Jiao Tong University", "gbrs_paired_asm": "GCA_003419945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/419/945/GCF_003419945.1_ASM341994v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6714237", "genome_size_ungapped": "6714237", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "183", "contig_count": "183", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-17", "total_gene_count": "6328", "protein_coding_gene_count": "5909", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-22", "dateModified": "2018-08-22", "datePublished": "2018-08-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora craniellae" ], "sample_taxid": [ "2294034" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Xisha" ], "sample_host_location_id": [], "data_size": "1.805 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6714237", "Number of Sequences": "183", "Longest Sequences (bp)": "675483", "N50 (bp)": "142412", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.0", "Number of CDSs": "6141", "Average Protein Length": "319.7", "Coding Ratio (%)": "87.7", "Number of rRNAs": "6", "Number of tRNAs": "62", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora craniellae", "strain": "strain=LHW63014", "accession": "GCA_003419945.1", "taxid": 2294034, 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"matched_fragments": 1370, "total_fragments": 2136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora tarapacensis", "strain": "strain=Llam7", "accession": "GCA_019697375.1", "taxid": 2835305, "species_taxid": 2835305, "relation_to_type": "type", "validated": true, "ani": 86.5715, "matched_fragments": 1372, "total_fragments": 2136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora fiedleri", "strain": "strain=MG-37", "accession": "GCA_016774385.1", "taxid": 1157498, "species_taxid": 1157498, "relation_to_type": "type", "validated": true, "ani": 86.33, "matched_fragments": 1384, "total_fragments": 2136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora gifhornensis", "strain": "strain=NBRC 16317", "accession": "GCA_016863515.1", "taxid": 84594, "species_taxid": 84594, "relation_to_type": "type", "validated": true, "ani": 86.1301, "matched_fragments": 1369, "total_fragments": 2136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora maris", "strain": "strain=NRRL B-24793", "accession": "GCA_001507315.1", "taxid": 1003110, "species_taxid": 1003110, "relation_to_type": "type", "validated": true, "ani": 86.1267, "matched_fragments": 1394, "total_fragments": 2136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phytophila", "strain": "strain=DSM 105363", "accession": "GCA_023656545.1", "taxid": 709888, "species_taxid": 709888, "relation_to_type": "type", "validated": true, "ani": 84.4416, "matched_fragments": 945, "total_fragments": 2136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora peucetia", "strain": "strain=DSM 43363", "accession": "GCA_900091625.1", "taxid": 47871, "species_taxid": 47871, "relation_to_type": "type", "validated": true, "ani": 83.9483, "matched_fragments": 1201, "total_fragments": 2136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 83.755, "matched_fragments": 1058, "total_fragments": 2136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora humida", "strain": "strain=MMS20-R1-14", "accession": "GCA_016901255.1", "taxid": 2809018, "species_taxid": 2809018, "relation_to_type": "type", "validated": true, "ani": 83.4653, "matched_fragments": 1238, "total_fragments": 2136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ferruginea", "strain": "strain=28ISP2-46", "accession": "GCA_013694245.1", "taxid": 2749844, "species_taxid": 2749844, "relation_to_type": "type", "validated": true, "ani": 83.3948, "matched_fragments": 1214, "total_fragments": 2136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora sagamiensis", "strain": "strain=JCM 3310", "accession": "GCA_014680085.1", "taxid": 47875, "species_taxid": 47875, "relation_to_type": "type", "validated": true, "ani": 82.9877, "matched_fragments": 1170, "total_fragments": 2136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora sagamiensis", "strain": "strain=DSM 43912", "accession": "GCA_007829995.1", "taxid": 47875, "species_taxid": 47875, "relation_to_type": "type", "validated": true, "ani": 82.9774, "matched_fragments": 1179, "total_fragments": 2136, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014764405.1", "gtdb_species": "s__Micromonospora craniellae", "ani": 99.9443, "matched_fragments": 2094, "total_fragments": 2136, "gtdb_taxonomy": 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