{
    "type": "genome",
    "identifier": "GCF_003426025.1",
    "organism": "Paraliobacillus quinghaiensis",
    "title": "Paraliobacillus quinghaiensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Chinese Center for Disease Control and Prevention",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003426025.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN09355198",
        "wgs_master": "QJSH00000000.1",
        "refseq_category": "reference genome",
        "taxid": "470815",
        "species_taxid": "470815",
        "organism_name": "Paraliobacillus quinghaiensis",
        "infraspecific_name": "strain=YIM-C158",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/08/23",
        "asm_name": "ASM342602v1",
        "asm_submitter": "Chinese Center for Disease Control and Prevention",
        "gbrs_paired_asm": "GCA_003426025.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/426/025/GCF_003426025.1_ASM342602v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3292626",
        "genome_size_ungapped": "3292626",
        "gc_percent": "35.000000",
        "replicon_count": "0",
        "scaffold_count": "67",
        "contig_count": "67",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003426025.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "3298",
        "protein_coding_gene_count": "3159",
        "non_coding_gene_count": "100",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-08-23",
    "dateModified": "2018-08-23",
    "datePublished": "2018-08-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paraliobacillus quinghaiensis"
        ],
        "sample_taxid": [
            "470815"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Qaidam Basin, Qinghai Province"
        ],
        "sample_host_location_id": [],
        "data_size": "0.931 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3292626",
        "Number of Sequences": "67",
        "Longest Sequences (bp)": "386779",
        "N50 (bp)": "132255",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "35.1",
        "Number of CDSs": "3186",
        "Average Protein Length": "286.1",
        "Coding Ratio (%)": "83.1",
        "Number of rRNAs": "10",
        "Number of tRNAs": "63",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Paraliobacillus quinghaiensis",
                "strain": "strain=YIM-C158",
                "accession": "GCA_003426025.1",
                "taxid": 470815,
                "species_taxid": 470815,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1058,
                "total_fragments": 1060,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Paraliobacillus quinghaiensis",
                "strain": "strain=CGMCC 1.6333",
                "accession": "GCA_014645115.1",
                "taxid": 470815,
                "species_taxid": 470815,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.994,
                "matched_fragments": 1052,
                "total_fragments": 1060,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Paraliobacillus zengyii",
                "strain": "strain=X-1125",
                "accession": "GCA_003268595.1",
                "taxid": 2213194,
                "species_taxid": 2213194,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6432,
                "matched_fragments": 404,
                "total_fragments": 1060,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraliobacillus sediminis",
                "strain": "strain=126C4",
                "accession": "GCA_003426055.1",
                "taxid": 1885916,
                "species_taxid": 1885916,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5185,
                "matched_fragments": 320,
                "total_fragments": 1060,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraliobacillus salinarum",
                "strain": "strain=G6-18",
                "accession": "GCA_014083865.1",
                "taxid": 1158996,
                "species_taxid": 1158996,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1229,
                "matched_fragments": 193,
                "total_fragments": 1060,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraliobacillus ryukyuensis",
                "strain": "strain=DSM 15140",
                "accession": "GCA_003315295.1",
                "taxid": 200904,
                "species_taxid": 200904,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6844,
                "matched_fragments": 182,
                "total_fragments": 1060,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pelagirhabdus alkalitolerans",
                "strain": "strain=S5",
                "accession": "GCA_900096905.1",
                "taxid": 1612202,
                "species_taxid": 1612202,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3903,
                "matched_fragments": 99,
                "total_fragments": 1060,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanobacillus jordanicus",
                "strain": "strain=GSFE11",
                "accession": "GCA_022095695.1",
                "taxid": 2867266,
                "species_taxid": 2867266,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9113,
                "matched_fragments": 66,
                "total_fragments": 1060,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gracilibacillus suaedae",
                "strain": "strain=LD4P30",
                "accession": "GCA_017599345.1",
                "taxid": 2820273,
                "species_taxid": 2820273,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8382,
                "matched_fragments": 99,
                "total_fragments": 1060,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003426025.1",
                "gtdb_species": "s__Paraliobacillus_A quinghaiensis",
                "ani": 100.0,
                "matched_fragments": 1058,
                "total_fragments": 1060,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Paraliobacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003268595.1",
                "gtdb_species": "s__Paraliobacillus_A zengyii",
                "ani": 78.6434,
                "matched_fragments": 407,
                "total_fragments": 1060,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Paraliobacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.46",
                "min_intra_species_ani": "99.36",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001368815.1",
                "gtdb_species": "s__Paraliobacillus sp001368815",
                "ani": 78.2413,
                "matched_fragments": 248,
                "total_fragments": 1060,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Paraliobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014083865.1",
                "gtdb_species": "s__Paraliobacillus salinarum",
                "ani": 78.1168,
                "matched_fragments": 194,
                "total_fragments": 1060,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Paraliobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009649745.1",
                "gtdb_species": "s__Aquibacillus_A halophilus",
                "ani": 77.6878,
                "matched_fragments": 136,
                "total_fragments": 1060,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Aquibacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003315295.1",
                "gtdb_species": "s__Paraliobacillus ryukyuensis",
                "ani": 77.6844,
                "matched_fragments": 182,
                "total_fragments": 1060,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Paraliobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.18",
                "min_intra_species_ani": "98.18",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900096905.1",
                "gtdb_species": "s__Pelagirhabdus alkalitolerans",
                "ani": 77.4194,
                "matched_fragments": 98,
                "total_fragments": 1060,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Pelagirhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016908375.1",
                "gtdb_species": "s__Amphibacillus_C cookii",
                "ani": 77.1163,
                "matched_fragments": 106,
                "total_fragments": 1060,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Amphibacillus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018919165.1",
                "gtdb_species": "s__Amphibacillus sp018919165",
                "ani": 76.6925,
                "matched_fragments": 86,
                "total_fragments": 1060,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Amphibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014642895.1",
                "gtdb_species": "s__Virgibacillus_E populi",
                "ani": 76.6901,
                "matched_fragments": 55,
                "total_fragments": 1060,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Virgibacillus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.98",
                "min_intra_species_ani": "98.88",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_000190475.1",
                "gtdb_species": "s__Ornithinibacillus scapharcae",
                "ani": 76.5543,
                "matched_fragments": 53,
                "total_fragments": 1060,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Ornithinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014207435.1",
                "gtdb_species": "s__Salirhabdus euzebyi",
                "ani": 76.2514,
                "matched_fragments": 71,
                "total_fragments": 1060,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Alkalibacillaceae;g__Salirhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.602,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 8.0,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Paraliobacillus",
        "quinghaiensis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}