{ "type": "genome", "identifier": "GCF_003426055.1", "organism": "Paraliobacillus sediminis", "title": "Paraliobacillus sediminis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Center for Disease Control and Prevention", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003426055.1", "bioproject": "PRJNA224116", "biosample": "SAMN09355200", "wgs_master": "QJSI00000000.1", "refseq_category": "reference genome", "taxid": "1885916", "species_taxid": "1885916", "organism_name": "Paraliobacillus sediminis", "infraspecific_name": "strain=126C4", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/23", "asm_name": "ASM342605v1", "asm_submitter": "Chinese Center for Disease Control and Prevention", "gbrs_paired_asm": "GCA_003426055.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/426/055/GCF_003426055.1_ASM342605v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4167048", "genome_size_ungapped": "4167048", "gc_percent": "35.500000", "replicon_count": "0", "scaffold_count": "4", "contig_count": "4", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003426055.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4111", "protein_coding_gene_count": "4014", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-23", "dateModified": "2018-08-23", "datePublished": "2018-08-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Paraliobacillus sediminis" ], "sample_taxid": [ "1885916" ], "sample_host_organism": [ "not collected" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not collected" ], "sample_host_location_id": [], "data_size": "1.171 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 50.0, "contamination": 33.33, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4167048", "Number of Sequences": "4", "Longest Sequences (bp)": "1326570", "N50 (bp)": "1316633", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.3", "Number of CDSs": "4123", "Average Protein Length": "288.2", "Coding Ratio (%)": "85.6", "Number of rRNAs": "3", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paraliobacillus sediminis", "strain": "strain=126C4", "accession": "GCA_003426055.1", "taxid": 1885916, "species_taxid": 1885916, 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"total_fragments": 1387, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquibacillus sediminis", "strain": "strain=BH258", "accession": "GCA_005870085.1", "taxid": 2574734, "species_taxid": 2574734, "relation_to_type": "type", "validated": true, "ani": 76.611, "matched_fragments": 124, "total_fragments": 1387, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 50.0, "contamination": 33.33, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_003268595.1", "gtdb_species": "s__Paraliobacillus_A zengyii", "ani": 87.6253, "matched_fragments": 819, "total_fragments": 1387, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Paraliobacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.46", "min_intra_species_ani": "99.36", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": 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