{ "type": "genome", "identifier": "GCF_003426875.1", "organism": "Lutibacter oceani", "title": "Lutibacter oceani", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003426875.1", "bioproject": "PRJNA224116", "biosample": "SAMN09780835", "wgs_master": "QUOZ00000000.1", "refseq_category": "reference genome", "taxid": "1853311", "species_taxid": "1853311", "organism_name": "Lutibacter oceani", "infraspecific_name": "strain=JCM30924", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/24", "asm_name": "ASM342687v1", "asm_submitter": "Shandong University", "gbrs_paired_asm": "GCA_003426875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/426/875/GCF_003426875.1_ASM342687v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3391846", "genome_size_ungapped": "3391846", "gc_percent": "29.500000", "replicon_count": "0", "scaffold_count": "21", "contig_count": "21", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003426875.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3012", "protein_coding_gene_count": "2957", "non_coding_gene_count": "45", "pubmed_id": "27651237" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-24", "dateModified": "2018-08-24", "datePublished": "2018-08-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Lutibacter oceani" ], "sample_taxid": [ "1853311" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.925 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3391846", "Number of Sequences": "21", "Longest Sequences (bp)": "869324", "N50 (bp)": "466048", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "29.6", "Number of CDSs": "2963", "Average Protein Length": "348.4", "Coding Ratio (%)": "91.3", "Number of rRNAs": "3", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lutibacter oceani", "strain": "strain=JCM30924", "accession": "GCA_003426875.1", "taxid": 1853311, "species_taxid": 1853311, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1119, "total_fragments": 1119, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lutibacter oceani", "strain": "strain=325-5", "accession": "GCA_003384935.1", "taxid": 1853311, "species_taxid": 1853311, "relation_to_type": "type", "validated": true, "ani": 99.9959, "matched_fragments": 1115, "total_fragments": 1119, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lutibacter flavus", "strain": "strain=DSM 27993", "accession": "GCA_900188355.1", "taxid": 691689, "species_taxid": 691689, "relation_to_type": "type", "validated": true, "ani": 82.4709, "matched_fragments": 823, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter citreus", "strain": "strain=1KV19", "accession": "GCA_003260195.1", "taxid": 2138210, "species_taxid": 2138210, "relation_to_type": "type", "validated": true, "ani": 80.5021, "matched_fragments": 636, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter maritimus", "strain": "strain=DSM 24450", "accession": "GCA_900116115.1", "taxid": 593133, "species_taxid": 593133, "relation_to_type": "type", "validated": true, "ani": 80.2729, "matched_fragments": 643, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter agarilyticus", "strain": "strain=DSM 29150", "accession": "GCA_900188235.1", "taxid": 1109740, "species_taxid": 1109740, "relation_to_type": "type", "validated": true, "ani": 80.015, "matched_fragments": 580, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter oricola", "strain": "strain=DSM 24956", "accession": "GCA_900106565.1", "taxid": 762486, "species_taxid": 762486, "relation_to_type": "type", "validated": true, "ani": 79.6542, "matched_fragments": 537, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter pectinis", "strain": "strain=L12M9", "accession": "GCA_014352875.1", "taxid": 2738844, "species_taxid": 2738844, "relation_to_type": "type", "validated": true, "ani": 77.3128, "matched_fragments": 267, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum aquimarinum", "strain": "strain=K20-16", "accession": "GCA_022478115.1", "taxid": 2910675, "species_taxid": 2910675, "relation_to_type": "type", "validated": true, "ani": 77.3081, "matched_fragments": 240, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter vadi", "strain": "strain=LPB0003", "accession": "GCA_001761365.1", "taxid": 1774273, "species_taxid": 1774273, "relation_to_type": "type", "validated": true, "ani": 77.1868, "matched_fragments": 252, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum todarodis", "strain": "strain=LPB0136", "accession": "GCA_001889045.1", "taxid": 1850252, "species_taxid": 1850252, "relation_to_type": "type", "validated": true, "ani": 77.0922, "matched_fragments": 231, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter septentrionalilitoris", "strain": "strain=ANORD1", "accession": "GCA_009832745.1", "taxid": 2494657, "species_taxid": 2494657, "relation_to_type": "type", "validated": true, "ani": 77.0538, "matched_fragments": 245, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter dokdonensis", "strain": "strain=KCTC 12392", "accession": "GCA_024362345.1", "taxid": 326329, "species_taxid": 326329, "relation_to_type": "type", "validated": true, "ani": 76.9145, "matched_fragments": 217, "total_fragments": 1119, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003384935.1", "gtdb_species": "s__Lutibacter oceani", "ani": 99.9959, 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"total_fragments": 1119, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Lutibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003260195.1", "gtdb_species": "s__Lutibacter citreus", "ani": 80.5087, "matched_fragments": 635, "total_fragments": 1119, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Lutibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016342705.1", "gtdb_species": "s__Lutibacter sp016342705", "ani": 80.3417, "matched_fragments": 646, "total_fragments": 1119, "gtdb_taxonomy": 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