{ "type": "genome", "identifier": "GCF_003426945.1", "organism": "Thermus sediminis", "title": "Thermus sediminis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003426945.1", "bioproject": "PRJNA224116", "biosample": "SAMN04488497", "wgs_master": "QURO00000000.1", "refseq_category": "reference genome", "taxid": "1761908", "species_taxid": "1761908", "organism_name": "Thermus sediminis", "infraspecific_name": "strain=L198", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/24", "asm_name": "ASM342694v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003426945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/426/945/GCF_003426945.1_ASM342694v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2160271", "genome_size_ungapped": "2160271", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "4", "contig_count": "4", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003426945.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "2327", "protein_coding_gene_count": "2189", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-24", "dateModified": "2018-08-24", "datePublished": "2018-08-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Thermus sediminis" ], "sample_taxid": [ "1761908" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.570 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2160271", "Number of Sequences": "4", "Longest Sequences (bp)": "2028157", "N50 (bp)": "2028157", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.2", "Number of CDSs": "2317", "Average Protein Length": "290.2", "Coding Ratio (%)": "93.4", "Number of rRNAs": "6", "Number of tRNAs": "52", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thermus sediminis", "strain": "strain=L198", "accession": "GCA_003426945.1", "taxid": 1761908, "species_taxid": 1761908, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 715, "total_fragments": 718, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Thermus aquaticus", "strain": "strain=YT-1", "accession": "GCA_001280255.1", "taxid": 271, "species_taxid": 271, "relation_to_type": "type", "validated": true, "ani": 88.5901, "matched_fragments": 580, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus arciformis", "strain": "strain=CGMCC 1.6992", "accession": "GCA_900102145.1", "taxid": 482827, "species_taxid": 482827, "relation_to_type": "type", "validated": true, "ani": 86.4274, "matched_fragments": 567, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus arciformis", "strain": "strain=JCM 15153", "accession": "GCA_022556335.1", "taxid": 482827, "species_taxid": 482827, "relation_to_type": "type", "validated": true, "ani": 86.2888, "matched_fragments": 559, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus igniterrae", "strain": "strain=ATCC 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84.6658, "matched_fragments": 552, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus scotoductus", "strain": "strain=DSM 8553", "accession": "GCA_000381045.1", "taxid": 37636, "species_taxid": 37636, "relation_to_type": "suspected-type", "validated": true, "ani": 83.5906, "matched_fragments": 503, "total_fragments": 718, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003426945.1", "gtdb_species": "s__Thermus sediminis", "ani": 100.0, "matched_fragments": 716, "total_fragments": 718, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Thermus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { 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85.9224, "matched_fragments": 353, "total_fragments": 718, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Thermus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000376265.1", "gtdb_species": "s__Thermus igniterrae", "ani": 85.7498, "matched_fragments": 546, "total_fragments": 718, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Thermus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001311545.1", "gtdb_species": "s__Thermus kawarayensis", "ani": 85.737, "matched_fragments": 330, "total_fragments": 718, "gtdb_taxonomy": 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