{ "type": "genome", "identifier": "GCF_003427025.1", "organism": "Jiangella endophytica", "title": "Jiangella endophytica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "King Mongkut's Institute of Technology Ladkrabang", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003427025.1", "bioproject": "PRJNA224116", "biosample": "SAMN09807919", "wgs_master": "QVAI00000000.1", "refseq_category": "reference genome", "taxid": "1623398", "species_taxid": "1623398", "organism_name": "Jiangella endophytica", "infraspecific_name": "strain=KE2-3", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/24", "asm_name": "ASM342702v1", "asm_submitter": "King Mongkut's Institute of Technology Ladkrabang", "gbrs_paired_asm": "GCA_003427025.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/427/025/GCF_003427025.1_ASM342702v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7850704", "genome_size_ungapped": "7850704", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "89", "contig_count": "89", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003427025.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "7158", "protein_coding_gene_count": "7018", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-24", "dateModified": "2018-08-24", "datePublished": "2018-08-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Jiangella endophytica" ], "sample_taxid": [ "1623398" ], "sample_host_organism": [ "Kaempferia elegans" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand:Pathumthani" ], "sample_host_location_id": [], "data_size": "2.071 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7850704", "Number of Sequences": "89", "Longest Sequences (bp)": "985357", "N50 (bp)": "298984", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.3", "Number of CDSs": "7094", "Average Protein Length": "336.2", "Coding Ratio (%)": "91.1", "Number of rRNAs": "3", "Number of tRNAs": "60", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Jiangella endophytica", "strain": "strain=KE2-3", "accession": "GCA_003427025.1", "taxid": 1623398, "species_taxid": 1623398, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2583, "total_fragments": 2584, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Jiangella alba", "strain": "strain=YIM 61503", "accession": "GCA_001708125.1", "taxid": 561176, "species_taxid": 561176, "relation_to_type": "type", "validated": true, "ani": 89.9461, "matched_fragments": 1905, "total_fragments": 2584, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella alba", "strain": "strain=DSM 45237", "accession": "GCA_900106035.1", "taxid": 561176, "species_taxid": 561176, "relation_to_type": "type", "validated": true, "ani": 89.8996, "matched_fragments": 1918, "total_fragments": 2584, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella muralis", "strain": "strain=DSM 45357", "accession": "GCA_001270745.1", "taxid": 702383, "species_taxid": 702383, "relation_to_type": "type", "validated": true, "ani": 89.8273, 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2584, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella aurantiaca", "strain": "strain=8K307", "accession": "GCA_004349105.1", "taxid": 2530373, "species_taxid": 2530373, "relation_to_type": "type", "validated": true, "ani": 89.0304, "matched_fragments": 1652, "total_fragments": 2584, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella anatolica", "strain": "strain=GTF31", "accession": "GCA_003236295.1", "taxid": 2670374, "species_taxid": 2670374, "relation_to_type": "type", "validated": true, "ani": 87.9358, "matched_fragments": 1654, "total_fragments": 2584, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella mangrovi", "strain": "strain=DSM 102122", "accession": "GCA_014204975.1", "taxid": 1524084, "species_taxid": 1524084, "relation_to_type": "type", "validated": true, "ani": 87.5762, "matched_fragments": 1786, "total_fragments": 2584, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella ureilytica", "strain": "strain=KC603", "accession": "GCA_004348545.1", "taxid": 2530374, "species_taxid": 2530374, "relation_to_type": "type", "validated": true, "ani": 87.4823, "matched_fragments": 1599, "total_fragments": 2584, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides donggukensis", "strain": "strain=MJB4", "accession": "GCA_014842875.1", "taxid": 2774019, "species_taxid": 2774019, "relation_to_type": "type", "validated": true, "ani": 76.9293, "matched_fragments": 495, "total_fragments": 2584, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoallomurus purpureus", "strain": "strain=KCTC 19541", "accession": "GCA_024055795.1", "taxid": 478114, "species_taxid": 478114, "relation_to_type": "type", "validated": true, "ani": 76.3159, "matched_fragments": 692, "total_fragments": 2584, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoallomurus spadix", "strain": "strain=KCTC 9252", "accession": "GCA_024055725.1", "taxid": 79912, "species_taxid": 79912, "relation_to_type": "type", "validated": true, "ani": 76.2074, "matched_fragments": 766, "total_fragments": 2584, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura rupiterrae", "strain": "strain=DSM 45251", "accession": "GCA_024172125.1", "taxid": 559627, "species_taxid": 559627, "relation_to_type": "type", "validated": true, "ani": 76.2006, "matched_fragments": 823, "total_fragments": 2584, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura graeca", "strain": "strain=32-07", "accession": "GCA_019175365.1", "taxid": 2750812, "species_taxid": 2750812, "relation_to_type": "type", "validated": true, "ani": 76.1352, "matched_fragments": 774, "total_fragments": 2584, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Jiangella", "endophytica" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }