{ "type": "genome", "identifier": "GCF_003428695.1", "organism": "Actinomadura logoneensis", "title": "Actinomadura logoneensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "School of life science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003428695.1", "bioproject": "PRJNA224116", "biosample": "SAMN09770274", "wgs_master": "QURH00000000.1", "refseq_category": "reference genome", "taxid": "2293572", "species_taxid": "2293572", "organism_name": "Actinomadura logoneensis", "infraspecific_name": "strain=NEAU-G17", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/27", "asm_name": "ASM342869v1", "asm_submitter": "School of life science", "gbrs_paired_asm": "GCA_003428695.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/428/695/GCF_003428695.1_ASM342869v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8093581", "genome_size_ungapped": "8093581", "gc_percent": "73.000000", "replicon_count": "0", "scaffold_count": "1054", "contig_count": "1054", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003428695.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "7726", "protein_coding_gene_count": "7301", "non_coding_gene_count": "76", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-27", "dateModified": "2018-08-27", "datePublished": "2018-08-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomadura logoneensis" ], "sample_taxid": [ "2293572" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Chad: Ndjamena" ], "sample_host_location_id": [], "data_size": "2.157 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8093581", "Number of Sequences": "1054", "Longest Sequences (bp)": "91209", "N50 (bp)": "13515", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "73.2", "Number of CDSs": "6552", "Average Protein Length": "304.8", "Coding Ratio (%)": "74.0", "Number of rRNAs": "3", "Number of tRNAs": "87", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinomadura logoneensis", "strain": "strain=NEAU-G17", "accession": "GCA_003428695.1", "taxid": 2293572, "species_taxid": 2293572, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2158, "total_fragments": 2189, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Actinomadura oligospora", "strain": "strain=ATCC 43269", "accession": "GCA_000518265.1", "taxid": 111804, "species_taxid": 111804, "relation_to_type": "type", "validated": true, "ani": 88.849, "matched_fragments": 1828, "total_fragments": 2189, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura harenae", "strain": "strain=NEAU-Ht49", "accession": "GCA_003696215.1", "taxid": 2483351, "species_taxid": 2483351, "relation_to_type": "type", "validated": true, "ani": 88.5189, "matched_fragments": 1773, "total_fragments": 2189, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura rupiterrae", "strain": "strain=DSM 45251", "accession": "GCA_024172125.1", "taxid": 559627, "species_taxid": 559627, "relation_to_type": "type", "validated": true, "ani": 87.0796, "matched_fragments": 1710, "total_fragments": 2189, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura macrotermitis", "strain": "strain=RB68", "accession": "GCA_009604375.1", "taxid": 2585200, "species_taxid": 2585200, "relation_to_type": "type", "validated": true, "ani": 81.9328, "matched_fragments": 1322, "total_fragments": 2189, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura kijaniata", "strain": "strain=NBRC 14229", "accession": "GCA_001552175.1", "taxid": 46161, "species_taxid": 46161, "relation_to_type": "type", "validated": true, "ani": 81.568, "matched_fragments": 1344, "total_fragments": 2189, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura violacea", "strain": "strain=LCR2-06", "accession": "GCA_017573465.1", "taxid": 2819934, "species_taxid": 2819934, "relation_to_type": "type", "validated": true, "ani": 81.4633, "matched_fragments": 1406, "total_fragments": 2189, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura nitritigenes", 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