{
    "type": "genome",
    "identifier": "GCF_003428875.1",
    "organism": "Planomicrobium okeanokoites",
    "title": "Planomicrobium okeanokoites",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Sichuan University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003428875.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN09708542",
        "wgs_master": "QQRS00000000.1",
        "refseq_category": "na",
        "taxid": "244",
        "species_taxid": "244",
        "organism_name": "Planomicrobium okeanokoites",
        "infraspecific_name": "strain=IFO 12536",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/08/27",
        "asm_name": "ASM342887v1",
        "asm_submitter": "Sichuan University",
        "gbrs_paired_asm": "GCA_003428875.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/428/875/GCF_003428875.1_ASM342887v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3299170",
        "genome_size_ungapped": "3299170",
        "gc_percent": "45.500000",
        "replicon_count": "0",
        "scaffold_count": "27",
        "contig_count": "27",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003428875.1-RS_2024_03_29",
        "annotation_date": "2024-03-29",
        "total_gene_count": "3354",
        "protein_coding_gene_count": "3268",
        "non_coding_gene_count": "64",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-08-27",
    "dateModified": "2018-08-27",
    "datePublished": "2018-08-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Planomicrobium okeanokoites"
        ],
        "sample_taxid": [
            "244"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan: coastal and offshore area of Nagasaki Prefecture"
        ],
        "sample_host_location_id": [],
        "data_size": "0.937 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3299170",
        "Number of Sequences": "27",
        "Longest Sequences (bp)": "958025",
        "N50 (bp)": "399100",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "45.5",
        "Number of CDSs": "3318",
        "Average Protein Length": "286.3",
        "Coding Ratio (%)": "86.4",
        "Number of rRNAs": "1",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Planococcus salinarum",
                "strain": "strain=KCTC 13584",
                "accession": "GCA_007004625.1",
                "taxid": 622695,
                "species_taxid": 622695,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.5123,
                "matched_fragments": 690,
                "total_fragments": 1089,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Planococcus salinarum",
                "strain": "strain=ISL-16",
                "accession": "GCA_003428865.1",
                "taxid": 622695,
                "species_taxid": 622695,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.4547,
                "matched_fragments": 688,
                "total_fragments": 1089,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Planococcus wigleyi",
                "strain": "strain=Sa1BUA13",
                "accession": "GCA_014836985.1",
                "taxid": 2762216,
                "species_taxid": 2762216,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3067,
                "matched_fragments": 335,
                "total_fragments": 1089,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Planococcus glaciei",
                "strain": "strain=CGMCC 1.6846",
                "accession": "GCA_900099655.1",
                "taxid": 459472,
                "species_taxid": 459472,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1604,
                "matched_fragments": 361,
                "total_fragments": 1089,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Planococcus koreensis",
                "strain": "strain=DSM 15895",
                "accession": "GCA_014202615.1",
                "taxid": 112331,
                "species_taxid": 112331,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0978,
                "matched_fragments": 350,
                "total_fragments": 1089,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Planococcus koreensis",
                "strain": "strain=10704",
                "accession": "GCA_004761975.1",
                "taxid": 112331,
                "species_taxid": 112331,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0968,
                "matched_fragments": 350,
                "total_fragments": 1089,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Planococcus ruber",
                "strain": "strain=CGMCC 1.19134",
                "accession": "GCA_022819085.1",
                "taxid": 2027871,
                "species_taxid": 2027871,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9642,
                "matched_fragments": 341,
                "total_fragments": 1089,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Planococcus massiliensis",
                "strain": "strain=ES2",
                "accession": "GCA_000821325.2",
                "taxid": 1499687,
                "species_taxid": 1499687,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.912,
                "matched_fragments": 353,
                "total_fragments": 1089,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Planococcus salinus",
                "strain": "strain=LCB217",
                "accession": "GCA_003719725.1",
                "taxid": 1848460,
                "species_taxid": 1848460,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8454,
                "matched_fragments": 311,
                "total_fragments": 1089,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Planococcus maitriensis",
                "strain": "strain=S1",
                "accession": "GCA_003289925.1",
                "taxid": 221799,
                "species_taxid": 221799,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8178,
                "matched_fragments": 294,
                "total_fragments": 1089,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Planococcus soli",
                "strain": "strain=c23",
                "accession": "GCA_016881065.1",
                "taxid": 2666072,
                "species_taxid": 2666072,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7736,
                "matched_fragments": 322,
                "total_fragments": 1089,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003428875.1",
                "gtdb_species": "s__Planococcus okeanokoites",
                "ani": 100.0,
                "matched_fragments": 1089,
                "total_fragments": 1089,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.50",
                "min_intra_species_ani": "97.25",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003289955.1",
                "gtdb_species": "s__Planococcus halotolerans",
                "ani": 86.668,
                "matched_fragments": 889,
                "total_fragments": 1089,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.14",
                "min_intra_species_ani": "99.14",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003668635.1",
                "gtdb_species": "s__Planococcus sp003668635",
                "ani": 86.5412,
                "matched_fragments": 914,
                "total_fragments": 1089,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007004625.1",
                "gtdb_species": "s__Planococcus salinarum",
                "ani": 82.5094,
                "matched_fragments": 690,
                "total_fragments": 1089,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_017873465.1",
                "gtdb_species": "s__Planococcus mcmeekinii",
                "ani": 82.4054,
                "matched_fragments": 726,
                "total_fragments": 1089,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000775575.1",
                "gtdb_species": "s__Planococcus sp000775575",
                "ani": 81.7268,
                "matched_fragments": 564,
                "total_fragments": 1089,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
        "cell_length": 0.0,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": 25.916,
        "optimum_ph": 7.433,
        "genome_size": 3747904.25,
        "gc_content": 46.997,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 1.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Planomicrobium",
        "okeanokoites"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}