{ "type": "genome", "identifier": "GCF_003430825.1", "organism": "Natrarchaeobaculum sulfurireducens", "title": "Natrarchaeobaculum sulfurireducens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "C.N.R. - Institute for Coastal Marine Environment (IAMC)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003430825.1", "bioproject": "PRJNA224116", "biosample": "SAMN07764453", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2044521", "species_taxid": "2044521", "organism_name": "Natrarchaeobaculum sulfurireducens", "infraspecific_name": "strain=AArc1", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/28", "asm_name": "ASM343082v1", "asm_submitter": "C.N.R. - Institute for Coastal Marine Environment (IAMC)", "gbrs_paired_asm": "GCA_003430825.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/430/825/GCF_003430825.1_ASM343082v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "archaea", "genome_size": "3789323", "genome_size_ungapped": "3789323", "gc_percent": "62.500000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003430825.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3736", "protein_coding_gene_count": "3623", "non_coding_gene_count": "62", "pubmed_id": "31166158" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-28", "dateModified": "2018-08-28", "datePublished": "2018-08-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Natrarchaeobaculum sulfurireducens" ], "sample_taxid": [ "2044521" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia: Kulunda Steppe, Altai" ], "sample_host_location_id": [], "data_size": "1.046 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3789323", "Number of Sequences": "3", "Longest Sequences (bp)": "3521804", "N50 (bp)": "3521804", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.4", "Number of CDSs": "3631", "Average Protein Length": "292.7", "Coding Ratio (%)": "84.1", "Number of rRNAs": "10", "Number of tRNAs": "50", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Natronobacterium texcoconense", "strain": "strain=DSM 24767", "accession": "GCA_900104065.1", "taxid": 1095778, "species_taxid": 1095778, "relation_to_type": "type", "validated": true, "ani": 80.2301, "matched_fragments": 689, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopiger xanaduensis", "strain": "strain=SH-6", "accession": "GCA_000217715.1", "taxid": 387343, "species_taxid": 387343, "relation_to_type": "type", "validated": true, "ani": 80.0194, "matched_fragments": 624, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halobiforma haloterrestris", "strain": "strain=DSM 13078", "accession": "GCA_900112205.1", "taxid": 148448, "species_taxid": 148448, "relation_to_type": "type", "validated": true, "ani": 79.9878, "matched_fragments": 680, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natronorubrum sulfidifaciens", "strain": "strain=JCM 14089", "accession": "GCA_000337735.1", "taxid": 388259, "species_taxid": 388259, "relation_to_type": "type", "validated": true, "ani": 79.9812, "matched_fragments": 596, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halobiforma lacisalsi", "strain": "strain=AJ5", "accession": "GCA_000226975.3", "taxid": 229731, "species_taxid": 229731, "relation_to_type": "type", "validated": true, "ani": 79.9753, "matched_fragments": 676, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloterrigena salina", "strain": "strain=JCM 13891", "accession": "GCA_000337495.1", "taxid": 504937, "species_taxid": 504937, "relation_to_type": "type", "validated": true, "ani": 79.9371, "matched_fragments": 634, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopiger aswanensis", "strain": "strain=DSM 13151", "accession": "GCA_003610195.1", "taxid": 148449, "species_taxid": 148449, "relation_to_type": "type", "validated": true, "ani": 79.8787, "matched_fragments": 641, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natrinema altunense", "strain": "strain=AJ2", "accession": "GCA_000731985.1", "taxid": 222984, "species_taxid": 222984, "relation_to_type": "type", "validated": true, "ani": 79.8072, "matched_fragments": 561, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natrinema altunense", "strain": "strain=JCM 12890", "accession": "GCA_000337155.1", "taxid": 222984, "species_taxid": 222984, "relation_to_type": "type", "validated": true, "ani": 79.7872, "matched_fragments": 556, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloterrigena salifodinae", "strain": "strain=ZY19", "accession": "GCA_003977755.1", "taxid": 2675099, "species_taxid": 2675099, "relation_to_type": "type", "validated": true, "ani": 79.7257, "matched_fragments": 610, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natrinema amylolyticum", "strain": "strain=LT61", "accession": "GCA_020515625.1", "taxid": 2878679, "species_taxid": 2878679, "relation_to_type": "type", "validated": true, "ani": 79.6915, "matched_fragments": 615, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopiger salifodinae", "strain": "strain=CGMCC 1.12284", "accession": "GCA_900110455.1", "taxid": 1202768, "species_taxid": 1202768, "relation_to_type": "type", "validated": true, "ani": 79.6701, "matched_fragments": 592, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natrinema pallidum", "strain": "strain=DSM 3751", "accession": "GCA_000337615.1", "taxid": 69527, "species_taxid": 69527, "relation_to_type": "type", "validated": true, "ani": 79.6338, "matched_fragments": 529, "total_fragments": 1261, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 8.33, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003430825.1", "gtdb_species": "s__Natrarchaeobaculum sulfurireducens", "ani": 100.0, "matched_fragments": 1261, "total_fragments": 1261, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natrarchaeobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.22", "min_intra_species_ani": "99.22", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_001563805.1", "gtdb_species": "s__Natrarchaeobaculum sp001563805", "ani": 88.4821, "matched_fragments": 691, "total_fragments": 1261, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natrarchaeobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002156705.1", "gtdb_species": "s__Natrarchaeobaculum aegyptiacum", "ani": 81.0839, "matched_fragments": 747, "total_fragments": 1261, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natrarchaeobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000337215.1", "gtdb_species": "s__Natronolimnohabitans innermongolicus", "ani": 80.3861, "matched_fragments": 685, "total_fragments": 1261, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natronolimnohabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000025325.1", "gtdb_species": "s__Haloterrigena turkmenica", "ani": 79.9903, "matched_fragments": 645, "total_fragments": 1261, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Haloterrigena", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000226975.2", "gtdb_species": "s__Halobiforma lacisalsi", "ani": 79.9837, "matched_fragments": 675, "total_fragments": 1261, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Halobiforma", "ani_circumscription_radius": 95.4693, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000731985.1", "gtdb_species": "s__Natrinema altunense", "ani": 79.8697, "matched_fragments": 554, "total_fragments": 1261, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natrinema", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.98", "min_intra_species_ani": "98.00", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.93", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_003977755.1", "gtdb_species": "s__Haloterrigena salifodinae", "ani": 79.7433, "matched_fragments": 608, "total_fragments": 1261, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Haloterrigena", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.23", "min_intra_species_ani": "98.23", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_008245225.1", "gtdb_species": "s__Natrarchaeobius swarupiae", "ani": 79.7233, "matched_fragments": 624, "total_fragments": 1261, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natrarchaeobius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.49", "min_intra_species_ani": "96.49", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000337615.1", "gtdb_species": "s__Natrinema pallidum", "ani": 79.6372, "matched_fragments": 529, "total_fragments": 1261, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natrinema", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.94", "min_intra_species_ani": "98.94", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Natrarchaeobaculum", "sulfurireducens" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }