{ "type": "genome", "identifier": "GCF_003431645.1", "organism": "Mycobacterium marinum", "title": "Mycobacterium marinum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Uppsala University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003431645.1", "bioproject": "PRJNA224116", "biosample": "SAMN07811439", "wgs_master": "PEDC00000000.1", "refseq_category": "na", "taxid": "1781", "species_taxid": "1781", "organism_name": "Mycobacterium marinum", "infraspecific_name": "strain=DSM 44344", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/29", "asm_name": "ASM343164v1", "asm_submitter": "Uppsala University", "gbrs_paired_asm": "GCA_003431645.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/431/645/GCF_003431645.1_ASM343164v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6304786", "genome_size_ungapped": "6302194", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "150", "contig_count": "150", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003431645.1-RS_2024_06_17", "annotation_date": "2024-06-17", "total_gene_count": "5541", "protein_coding_gene_count": "5259", "non_coding_gene_count": "53", "pubmed_id": "30104693" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-08-29", "dateModified": "2018-08-29", "datePublished": "2018-08-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium marinum" ], "sample_taxid": [ "1781" ], "sample_host_organism": [ "fish" ], "sample_host_organism_id": [], "sample_host_disease": [ "mycobacteriosis" ], "sample_host_disease_id": [], "sample_host_location": [ "USA: Philadelphia" ], "sample_host_location_id": [], "data_size": "1.751 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6304786", "Number of Sequences": "150", "Longest Sequences (bp)": "549467", "N50 (bp)": "175929", "Gap Ratio (%)": "0.063793", "GCcontent (%)": "65.7", "Number of CDSs": "5401", "Average Protein Length": "336.7", "Coding Ratio (%)": "86.5", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "8" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycobacterium marinum", "strain": "strain=DSM 44344", "accession": "GCA_003431645.1", "taxid": 1781, "species_taxid": 1781, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 2040, "total_fragments": 2044, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Mycobacterium marinum", "strain": "strain=CCUG20998", "accession": "GCA_003391395.1", "taxid": 1781, "species_taxid": 1781, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9647, "matched_fragments": 2044, "total_fragments": 2044, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Mycobacterium marinum", "strain": "strain=NCTC2275", "accession": "GCA_003431655.1", "taxid": 1781, "species_taxid": 1781, "relation_to_type": "suspected-type", "validated": true, "ani": 99.8828, "matched_fragments": 1982, "total_fragments": 2044, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Mycobacterium shottsii", "strain": "strain=M175", "accession": "GCA_019456695.2", "taxid": 133549, "species_taxid": 133549, "relation_to_type": "suspected-type", "validated": true, "ani": 98.7848, "matched_fragments": 1768, "total_fragments": 2044, "ani_threshold": 95, "status": "inconclusive" }, { 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