{
    "type": "genome",
    "identifier": "GCF_003431825.1",
    "organism": "Blastomonas fulva",
    "title": "Blastomonas fulva",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Korea Research Institute of Bioscience and Biotechnology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003431825.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN06473103",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1550728",
        "species_taxid": "1550728",
        "organism_name": "Blastomonas fulva",
        "infraspecific_name": "strain=T2",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/08/03",
        "asm_name": "ASM343182v1",
        "asm_submitter": "Korea Research Institute of Bioscience and Biotechnology",
        "gbrs_paired_asm": "GCA_003431825.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/431/825/GCF_003431825.1_ASM343182v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4123210",
        "genome_size_ungapped": "4123210",
        "gc_percent": "64.000000",
        "replicon_count": "2",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003431825.1-RS_2024_05_04",
        "annotation_date": "2024-05-04",
        "total_gene_count": "3911",
        "protein_coding_gene_count": "3827",
        "non_coding_gene_count": "56",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-08-03",
    "dateModified": "2017-08-03",
    "datePublished": "2017-08-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Blastomonas fulva"
        ],
        "sample_taxid": [
            "1550728"
        ],
        "sample_host_organism": [
            "missing"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea: Daejeon"
        ],
        "sample_host_location_id": [],
        "data_size": "1.134 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4123210",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "3977381",
        "N50 (bp)": "3977381",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "64.2",
        "Number of CDSs": "3901",
        "Average Protein Length": "319.2",
        "Coding Ratio (%)": "90.6",
        "Number of rRNAs": "6",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Blastomonas fulva",
                "strain": "strain=T2",
                "accession": "GCA_003431825.1",
                "taxid": 1550728,
                "species_taxid": 1550728,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1373,
                "total_fragments": 1373,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Blastomonas aquatica",
                "strain": "strain=CGMCC 1.12851",
                "accession": "GCA_014639875.1",
                "taxid": 1510276,
                "species_taxid": 1510276,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.0833,
                "matched_fragments": 925,
                "total_fragments": 1373,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Novosphingobium huizhouense",
                "strain": "strain=c7",
                "accession": "GCA_020179475.1",
                "taxid": 2866625,
                "species_taxid": 2866625,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4032,
                "matched_fragments": 412,
                "total_fragments": 1373,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas trueperi",
                "strain": "strain=DSM 7225",
                "accession": "GCA_011927635.1",
                "taxid": 53317,
                "species_taxid": 53317,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2816,
                "matched_fragments": 389,
                "total_fragments": 1373,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobium amiense",
                "strain": "strain=NBRC 102518",
                "accession": "GCA_001591305.1",
                "taxid": 135719,
                "species_taxid": 135719,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2766,
                "matched_fragments": 343,
                "total_fragments": 1373,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobium amiense",
                "strain": "strain=DSM 16289",
                "accession": "GCA_003967075.1",
                "taxid": 135719,
                "species_taxid": 135719,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2737,
                "matched_fragments": 357,
                "total_fragments": 1373,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Erythrobacter colymbi",
                "strain": "strain=JCM 18338",
                "accession": "GCA_002155685.1",
                "taxid": 1161202,
                "species_taxid": 1161202,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2468,
                "matched_fragments": 427,
                "total_fragments": 1373,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Novosphingobium kunmingense",
                "strain": "strain=CGMCC 1.12274",
                "accession": "GCA_002813245.1",
                "taxid": 1211806,
                "species_taxid": 1211806,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2347,
                "matched_fragments": 331,
                "total_fragments": 1373,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Erythrobacter donghaensis",
                "strain": "strain=DSM 16220",
                "accession": "GCA_002155425.1",
                "taxid": 267135,
                "species_taxid": 267135,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.1983,
                "matched_fragments": 362,
                "total_fragments": 1373,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Novosphingobium aquimarinum",
                "strain": "strain=M24A2M",
                "accession": "GCA_009746585.1",
                "taxid": 2682494,
                "species_taxid": 2682494,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0206,
                "matched_fragments": 302,
                "total_fragments": 1373,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Novosphingobium arvoryzae",
                "strain": "strain=KCTC 32422",
                "accession": "GCA_014652615.1",
                "taxid": 1256514,
                "species_taxid": 1256514,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9933,
                "matched_fragments": 376,
                "total_fragments": 1373,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas chungangi",
                "strain": "strain=CGMCC 1.13654",
                "accession": "GCA_013778325.1",
                "taxid": 2683589,
                "species_taxid": 2683589,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.965,
                "matched_fragments": 320,
                "total_fragments": 1373,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Erythrobacter dokdonensis",
                "strain": "strain=DSW-74",
                "accession": "GCA_001677335.1",
                "taxid": 328225,
                "species_taxid": 328225,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9201,
                "matched_fragments": 326,
                "total_fragments": 1373,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas koreensis",
                "strain": "strain=NBRC 16723",
                "accession": "GCA_001598395.1",
                "taxid": 93064,
                "species_taxid": 93064,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9146,
                "matched_fragments": 378,
                "total_fragments": 1373,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas taxi",
                "strain": "strain=ATCC 55669",
                "accession": "GCA_000764535.1",
                "taxid": 1549858,
                "species_taxid": 1549858,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8977,
                "matched_fragments": 377,
                "total_fragments": 1373,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas laterariae",
                "strain": "strain=LNB2",
                "accession": "GCA_900188165.1",
                "taxid": 861865,
                "species_taxid": 861865,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8221,
                "matched_fragments": 355,
                "total_fragments": 1373,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas albertensis",
                "strain": "strain=DOAB 1063",
                "accession": "GCA_014358075.1",
                "taxid": 2762591,
                "species_taxid": 2762591,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8035,
                "matched_fragments": 306,
                "total_fragments": 1373,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas hankookensis",
                "strain": "strain=KCTC 22579",
                "accession": "GCA_022664465.1",
                "taxid": 563996,
                "species_taxid": 563996,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7849,
                "matched_fragments": 336,
                "total_fragments": 1373,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Novosphingobium endophyticum",
                "strain": "strain=CGMCC 1.15095",
                "accession": "GCA_014640675.1",
                "taxid": 1955250,
                "species_taxid": 1955250,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7243,
                "matched_fragments": 299,
                "total_fragments": 1373,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas flavalba",
                "strain": "strain=ZLT-5",
                "accession": "GCA_004796535.1",
                "taxid": 2559804,
                "species_taxid": 2559804,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6427,
                "matched_fragments": 333,
                "total_fragments": 1373,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Croceicoccus gelatinilyticus",
                "strain": "strain=1NDH52",
                "accession": "GCA_018398395.1",
                "taxid": 2835536,
                "species_taxid": 2835536,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6044,
                "matched_fragments": 279,
                "total_fragments": 1373,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pelagerythrobacter rhizovicinus",
                "strain": "strain=AY-3R",
                "accession": "GCA_004135625.1",
                "taxid": 2268576,
                "species_taxid": 2268576,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5818,
                "matched_fragments": 304,
                "total_fragments": 1373,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Qipengyuania qiaonensis",
                "strain": "strain=6D47A",
                "accession": "GCA_019711515.1",
                "taxid": 2867240,
                "species_taxid": 2867240,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3785,
                "matched_fragments": 248,
                "total_fragments": 1373,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003431825.1",
                "gtdb_species": "s__Blastomonas fulva",
                "ani": 100.0,
                "matched_fragments": 1373,
                "total_fragments": 1373,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Blastomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.01",
                "min_intra_species_ani": "97.97",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_014639875.1",
                "gtdb_species": "s__Blastomonas aquatica",
                "ani": 86.0838,
                "matched_fragments": 926,
                "total_fragments": 1373,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Blastomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000786215.1",
                "gtdb_species": "s__Blastomonas sp000786215",
                "ani": 85.7937,
                "matched_fragments": 937,
                "total_fragments": 1373,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Blastomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000331245.1",
                "gtdb_species": "s__Blastomonas sp000331245",
                "ani": 85.6274,
                "matched_fragments": 906,
                "total_fragments": 1373,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Blastomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000503195.1",
                "gtdb_species": "s__Blastomonas sp000503195",
                "ani": 85.055,
                "matched_fragments": 904,
                "total_fragments": 1373,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Blastomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.00",
                "min_intra_species_ani": "97.00",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_001555775.1",
                "gtdb_species": "s__Blastomonas delafieldii_A",
                "ani": 84.7934,
                "matched_fragments": 863,
                "total_fragments": 1373,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Blastomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.74",
                "min_intra_species_ani": "98.25",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 22,
                "status": "-"
            },
            {
                "accession": "GCF_013607875.1",
                "gtdb_species": "s__Blastomonas ursincola",
                "ani": 84.6984,
                "matched_fragments": 897,
                "total_fragments": 1373,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Blastomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.82",
                "min_intra_species_ani": "97.14",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 7,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 26.5,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 4123210.0,
        "gc_content": 64.172,
        "coding_genes": 3762.0,
        "rRNA16S_genes": null,
        "tRNA_genes": 46.0,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Blastomonas",
        "fulva"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}