{ "type": "genome", "identifier": "GCF_003443895.1", "organism": "Paraburkholderia phosphatilytica", "title": "Paraburkholderia phosphatilytica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sun Yat-sen University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003443895.1", "bioproject": "PRJNA224116", "biosample": "SAMN09703128", "wgs_master": "QQOA00000000.1", "refseq_category": "reference genome", "taxid": "2282883", "species_taxid": "2282883", "organism_name": "Paraburkholderia phosphatilytica", "infraspecific_name": "strain=7QSK02", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/04", "asm_name": "ASM344389v1", "asm_submitter": "Sun Yat-sen University", "gbrs_paired_asm": "GCA_003443895.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/443/895/GCF_003443895.1_ASM344389v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8098302", "genome_size_ungapped": "8097744", "gc_percent": "65.000000", "replicon_count": "0", "scaffold_count": "109", "contig_count": "109", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003443895.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "7405", "protein_coding_gene_count": "7224", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-04", "dateModified": "2018-09-04", "datePublished": "2018-09-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Paraburkholderia phosphatilytica" ], "sample_taxid": [ "2282883" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Guangdong Province" ], "sample_host_location_id": [], "data_size": "2.225 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8098302", "Number of Sequences": "109", "Longest Sequences (bp)": "439122", "N50 (bp)": "157894", "Gap Ratio (%)": "0.006903", "GCcontent (%)": "64.9", "Number of CDSs": "7287", "Average Protein Length": "321.3", "Coding Ratio (%)": "86.7", "Number of rRNAs": "2", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paraburkholderia phosphatilytica", "strain": "strain=7QSK02", "accession": "GCA_003443895.1", "taxid": 2282883, "species_taxid": 2282883, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2636, "total_fragments": 2643, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paraburkholderia flava", "strain": "strain=LD6", "accession": "GCA_004359985.1", "taxid": 2547393, "species_taxid": 2547393, "relation_to_type": "type", "validated": true, "ani": 83.1895, "matched_fragments": 1309, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia caballeronis", "strain": "strain=LMG 26416", "accession": "GCA_900109675.1", "taxid": 416943, "species_taxid": 416943, "relation_to_type": "type", "validated": true, "ani": 83.1593, "matched_fragments": 1232, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia caballeronis", "strain": "strain=TNe-841", "accession": "GCA_900104845.1", "taxid": 416943, "species_taxid": 416943, "relation_to_type": "type", "validated": true, "ani": 83.1223, "matched_fragments": 1244, "total_fragments": 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"below_threshold" }, { "organism_name": "Burkholderia territorii", "strain": "strain=CCUG 65687", "accession": "GCA_008802115.1", "taxid": 1503055, "species_taxid": 1503055, "relation_to_type": "type", "validated": true, "ani": 82.4294, "matched_fragments": 812, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia azotifigens", "strain": "strain=NF 2-5-3", "accession": "GCA_007995085.1", "taxid": 2057004, "species_taxid": 2057004, "relation_to_type": "type", "validated": true, "ani": 82.3992, "matched_fragments": 1427, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia pseudomultivorans", "strain": "", "accession": "GCA_902499075.1", "taxid": 1207504, "species_taxid": 1207504, "relation_to_type": "suspected-type", "validated": true, "ani": 82.3757, "matched_fragments": 1156, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia ubonensis", "strain": "", "accession": "GCA_902499185.1", "taxid": 101571, "species_taxid": 101571, "relation_to_type": "type", "validated": true, "ani": 82.3502, "matched_fragments": 1147, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia saeva", "strain": "strain=LMG 31841", "accession": "GCA_907164555.1", "taxid": 2777537, "species_taxid": 2777537, "relation_to_type": "type", "validated": true, "ani": 82.306, "matched_fragments": 1123, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia territorii", "strain": "", "accession": "GCA_902499035.1", "taxid": 1503055, "species_taxid": 1503055, "relation_to_type": "type", "validated": true, "ani": 82.2356, "matched_fragments": 1090, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia stagnalis", "strain": "strain=CCUG 65686", "accession": "GCA_008802125.1", "taxid": 1503054, "species_taxid": 1503054, "relation_to_type": "type", "validated": true, "ani": 82.2324, "matched_fragments": 1169, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia stagnalis", "strain": "", "accession": "GCA_902499155.1", "taxid": 1503054, "species_taxid": 1503054, "relation_to_type": "type", "validated": true, "ani": 82.2259, "matched_fragments": 1157, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia multivorans", "strain": "strain=ATCC BAA-247", "accession": "GCA_000286555.1", "taxid": 87883, "species_taxid": 87883, "relation_to_type": "type", "validated": true, "ani": 82.2048, "matched_fragments": 995, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia stagnalis", "strain": "strain=LMG 28156", "accession": "GCA_902830275.1", "taxid": 1503054, "species_taxid": 1503054, "relation_to_type": "type", "validated": true, "ani": 82.1703, "matched_fragments": 1209, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia territorii", "strain": "strain=LMG 28158", "accession": "GCA_902833055.1", "taxid": 1503055, "species_taxid": 1503055, "relation_to_type": "type", "validated": true, "ani": 82.1619, "matched_fragments": 1122, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia multivorans", "strain": "strain=NCTC13007", "accession": "GCA_900446205.1", "taxid": 87883, "species_taxid": 87883, "relation_to_type": "type", "validated": true, "ani": 82.1486, "matched_fragments": 1162, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia multivorans", "strain": "strain=ATCC BAA-247", "accession": "GCA_000959525.1", "taxid": 87883, "species_taxid": 87883, "relation_to_type": "type", "validated": true, "ani": 82.1238, "matched_fragments": 1151, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia oklahomensis", "strain": "strain=C6786", "accession": "GCA_001522135.2", "taxid": 342113, "species_taxid": 342113, "relation_to_type": "type", "validated": true, "ani": 82.0525, "matched_fragments": 1126, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia oklahomensis", "strain": "strain=LMG 23618", "accession": "GCA_900608545.1", "taxid": 342113, "species_taxid": 342113, "relation_to_type": "type", "validated": true, "ani": 82.0492, "matched_fragments": 1123, "total_fragments": 2643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia oklahomensis", "strain": "strain=C6786", "accession": "GCA_000170375.1", "taxid": 342113, "species_taxid": 342113, "relation_to_type": "type", "validated": true, "ani": 82.0329, 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95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003443895.1", "gtdb_species": "s__Paraburkholderia phosphatilytica", "ani": 100.0, "matched_fragments": 2636, "total_fragments": 2643, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_011752995.1", "gtdb_species": "s__Paraburkholderia sp011752995", "ani": 83.2461, "matched_fragments": 1195, "total_fragments": 2643, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": 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