{ "type": "genome", "identifier": "GCF_003470205.1", "organism": "Cellulomonas rhizosphaerae", "title": "Cellulomonas rhizosphaerae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "School of life science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003470205.1", "bioproject": "PRJNA224116", "biosample": "SAMN09767214", "wgs_master": "QWKP00000000.1", "refseq_category": "reference genome", "taxid": "2293719", "species_taxid": "2293719", "organism_name": "Cellulomonas rhizosphaerae", "infraspecific_name": "strain=NEAU-TCZ24", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/06", "asm_name": "ASM347020v1", "asm_submitter": "School of life science", "gbrs_paired_asm": "GCA_003470205.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/470/205/GCF_003470205.1_ASM347020v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3657983", "genome_size_ungapped": "3657983", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "223", "contig_count": "223", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003470205.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3592", "protein_coding_gene_count": "3458", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-06", "dateModified": "2018-09-06", "datePublished": "2018-09-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Cellulomonas rhizosphaerae" ], "sample_taxid": [ "2293719" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Jiaozuo, Cornel peak" ], "sample_host_location_id": [], "data_size": "0.967 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3657983", "Number of Sequences": "223", "Longest Sequences (bp)": "167124", "N50 (bp)": "27510", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.7", "Number of CDSs": "3259", "Average Protein Length": "320.3", "Coding Ratio (%)": "85.6", "Number of rRNAs": "3", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cellulomonas rhizosphaerae", "strain": "strain=NEAU-TCZ24", "accession": "GCA_003470205.1", "taxid": 2293719, "species_taxid": 2293719, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1099, "total_fragments": 1113, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cellulomonas biazotea", "strain": "strain=NBRC12680", "accession": "GCA_004306155.1", "taxid": 1709, "species_taxid": 1709, "relation_to_type": "type", "validated": true, "ani": 82.2981, "matched_fragments": 657, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas persica", "strain": "strain=NBRC 101101", "accession": "GCA_007989825.1", "taxid": 76861, "species_taxid": 76861, "relation_to_type": "type", "validated": true, "ani": 82.2405, "matched_fragments": 679, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas humilata", "strain": "strain=ATCC 25174", "accession": "GCA_013359775.1", "taxid": 144055, "species_taxid": 144055, "relation_to_type": "type", "validated": true, "ani": 82.2232, "matched_fragments": 702, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas palmilytica", "strain": "strain=EW123", "accession": "GCA_021590045.1", "taxid": 2608402, "species_taxid": 2608402, "relation_to_type": "type", "validated": true, "ani": 82.1969, "matched_fragments": 693, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas xylanilytica", "strain": "strain=NBRC 101102", "accession": "GCA_007989805.1", "taxid": 233583, "species_taxid": 233583, "relation_to_type": "type", "validated": true, "ani": 82.1714, "matched_fragments": 719, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas fimi", "strain": "strain=NCTC7547", "accession": "GCA_900637695.1", "taxid": 1708, "species_taxid": 1708, "relation_to_type": "type", "validated": true, "ani": 82.1005, "matched_fragments": 703, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas fulva", "strain": "strain=DKR-3", "accession": "GCA_018531375.1", "taxid": 2835530, "species_taxid": 2835530, "relation_to_type": "type", "validated": true, "ani": 82.0968, "matched_fragments": 707, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas gilvus", "strain": "strain=ATCC 13127", "accession": "GCA_000218545.1", "taxid": 11, "species_taxid": 11, "relation_to_type": "type", "validated": true, "ani": 82.0551, "matched_fragments": 654, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas fimi", "strain": "strain=ATCC 484", "accession": "GCA_000212695.1", "taxid": 1708, "species_taxid": 1708, "relation_to_type": "type", "validated": true, "ani": 82.0452, "matched_fragments": 718, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas terrae", "strain": "strain=NBRC 100819", "accession": "GCA_007990265.1", "taxid": 311234, "species_taxid": 311234, "relation_to_type": "type", "validated": true, "ani": 82.0333, "matched_fragments": 708, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas massiliensis", "strain": "strain=JC225", "accession": "GCA_000312005.1", "taxid": 1465811, "species_taxid": 1465811, "relation_to_type": "type", "validated": true, "ani": 81.8443, "matched_fragments": 665, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas soli", "strain": "strain=DSM 24484", "accession": "GCA_013409305.1", "taxid": 931535, "species_taxid": 931535, "relation_to_type": "type", "validated": true, "ani": 81.3069, "matched_fragments": 628, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas iranensis", "strain": "strain=NBRC 101100", "accession": "GCA_001552375.1", "taxid": 76862, "species_taxid": 76862, "relation_to_type": "type", "validated": true, "ani": 81.2621, "matched_fragments": 626, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas cellasea", "strain": "strain=DSM 20118", "accession": "GCA_000767135.1", "taxid": 43670, "species_taxid": 43670, "relation_to_type": "type", "validated": true, "ani": 81.0457, "matched_fragments": 563, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas avistercoris", "strain": "strain=Sa3CUA2", "accession": "GCA_014836445.1", "taxid": 2762242, "species_taxid": 2762242, "relation_to_type": "type", "validated": true, "ani": 80.7898, "matched_fragments": 608, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminihabitans luteus", "strain": "strain=DSM 25478", "accession": "GCA_002797595.1", "taxid": 1138585, "species_taxid": 1138585, "relation_to_type": "type", "validated": true, "ani": 79.9098, "matched_fragments": 519, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminihabitans luteus", "strain": "strain=NBRC 108568", "accession": "GCA_016863455.1", "taxid": 1138585, "species_taxid": 1138585, "relation_to_type": "type", "validated": true, "ani": 79.882, "matched_fragments": 530, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea solisilvae", "strain": "strain=KACC 19191", "accession": "GCA_016464425.1", "taxid": 2072922, "species_taxid": 2072922, "relation_to_type": "type", "validated": true, "ani": 79.7235, "matched_fragments": 583, "total_fragments": 1113, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia douganii", "strain": "strain=Sa1BUA8", "accession": "GCA_015142735.1", "taxid": 2762210, "species_taxid": 2762210, "relation_to_type": "type", "validated": true, "ani": 79.6325, 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