{ "type": "genome", "identifier": "GCF_003544875.1", "organism": "Vibrio alfacsensis", "title": "Vibrio alfacsensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "CIAD, A.C.", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003544875.1", "bioproject": "PRJNA224116", "biosample": "SAMN09917449", "wgs_master": "na", "refseq_category": "na", "taxid": "1074311", "species_taxid": "1074311", "organism_name": "Vibrio alfacsensis", "infraspecific_name": "strain=CAIM 1831", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/11", "asm_name": "ASM354487v1", "asm_submitter": "CIAD, A.C.", "gbrs_paired_asm": "GCA_003544875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/544/875/GCF_003544875.1_ASM354487v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4910231", "genome_size_ungapped": "4910231", "gc_percent": "44.000000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-05", "total_gene_count": "4504", "protein_coding_gene_count": "3858", "non_coding_gene_count": "169", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-11", "dateModified": "2018-09-11", "datePublished": "2018-09-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio alfacsensis" ], "sample_taxid": [ "1074311" ], "sample_host_organism": [ "Solea senegalensis" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain: Ebro delta, Catalonia" ], 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906, "total_fragments": 1635, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio parahaemolyticus", "strain": "strain=ATCC 17802", "accession": "GCA_001011015.1", "taxid": 670, "species_taxid": 670, "relation_to_type": "type", "validated": true, "ani": 82.6398, "matched_fragments": 867, "total_fragments": 1635, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio natriegens", "strain": "strain=14048", "accession": "GCA_024508015.1", "taxid": 691, "species_taxid": 691, "relation_to_type": "type", "validated": true, "ani": 81.9109, "matched_fragments": 753, "total_fragments": 1635, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio panuliri", "strain": "strain=JCM 19500", "accession": "GCA_009938205.1", "taxid": 1381081, "species_taxid": 1381081, "relation_to_type": "type", "validated": true, "ani": 81.0627, "matched_fragments": 408, "total_fragments": 1635, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio pelagius", "strain": "strain=ATCC 25916", "accession": "GCA_024347575.1", "taxid": 28169, "species_taxid": 28169, "relation_to_type": "type", "validated": true, "ani": 80.8293, "matched_fragments": 458, "total_fragments": 1635, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio panuliri", "strain": "strain=LBS 2", "accession": "GCA_008830195.1", "taxid": 1381081, "species_taxid": 1381081, "relation_to_type": "type", "validated": true, "ani": 80.7932, "matched_fragments": 391, "total_fragments": 1635, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio splendidus", "strain": "strain=LMG 19031", "accession": "GCA_024347615.1", "taxid": 29497, "species_taxid": 29497, "relation_to_type": "type", "validated": true, "ani": 80.1077, "matched_fragments": 440, "total_fragments": 1635, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, 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