{
    "type": "genome",
    "identifier": "GCF_003555545.1",
    "organism": "Paraflavitalea soli",
    "title": "Paraflavitalea soli",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Agricultural Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003555545.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN09981721",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2315862",
        "species_taxid": "2315862",
        "organism_name": "Paraflavitalea soli",
        "infraspecific_name": "strain=5GH32-13",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/09/13",
        "asm_name": "ASM355554v1",
        "asm_submitter": "National Institute of Agricultural Sciences",
        "gbrs_paired_asm": "GCA_003555545.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/555/545/GCF_003555545.1_ASM355554v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "8443189",
        "genome_size_ungapped": "8443189",
        "gc_percent": "47.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003555545.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "6501",
        "protein_coding_gene_count": "6433",
        "non_coding_gene_count": "63",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-09-13",
    "dateModified": "2018-09-13",
    "datePublished": "2018-09-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paraflavitalea soli"
        ],
        "sample_taxid": [
            "2315862"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea: Yongin"
        ],
        "sample_host_location_id": [],
        "data_size": "2.391 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "8443189",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "8443189",
        "N50 (bp)": "8443189",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "47.5",
        "Number of CDSs": "6415",
        "Average Protein Length": "386.8",
        "Coding Ratio (%)": "88.2",
        "Number of rRNAs": "6",
        "Number of tRNAs": "56",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Paraflavitalea soli",
                "strain": "strain=5GH32-13",
                "accession": "GCA_003555545.1",
                "taxid": 2315862,
                "species_taxid": 2315862,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2814,
                "total_fragments": 2814,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Paraflavitalea devenefica",
                "strain": "strain=X16",
                "accession": "GCA_011759375.1",
                "taxid": 2716334,
                "species_taxid": 2716334,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.505,
                "matched_fragments": 1365,
                "total_fragments": 2814,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudobacter ginsenosidimutans",
                "strain": "strain=Gsoil 221",
                "accession": "GCA_007970185.1",
                "taxid": 661488,
                "species_taxid": 661488,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.207,
                "matched_fragments": 346,
                "total_fragments": 2814,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Niastella koreensis",
                "strain": "strain=GR20-10",
                "accession": "GCA_000246855.1",
                "taxid": 354356,
                "species_taxid": 354356,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.168,
                "matched_fragments": 326,
                "total_fragments": 2814,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudobacter ginsenosidimutans",
                "strain": "strain=DSM 18116",
                "accession": "GCA_004291315.1",
                "taxid": 661488,
                "species_taxid": 661488,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1406,
                "matched_fragments": 340,
                "total_fragments": 2814,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Niastella koreensis",
                "strain": "strain=DSM 17620",
                "accession": "GCA_002077985.1",
                "taxid": 354356,
                "species_taxid": 354356,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9961,
                "matched_fragments": 321,
                "total_fragments": 2814,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Niastella populi",
                "strain": "strain=CCTCC AB 208238",
                "accession": "GCA_002078015.1",
                "taxid": 550983,
                "species_taxid": 550983,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8539,
                "matched_fragments": 322,
                "total_fragments": 2814,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Niastella caeni",
                "strain": "strain=HX-16-21",
                "accession": "GCA_004834005.1",
                "taxid": 2569763,
                "species_taxid": 2569763,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8433,
                "matched_fragments": 329,
                "total_fragments": 2814,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Niastella soli",
                "strain": "strain=MAH-29",
                "accession": "GCA_017742245.1",
                "taxid": 2821487,
                "species_taxid": 2821487,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7239,
                "matched_fragments": 318,
                "total_fragments": 2814,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Niastella vici",
                "strain": "strain=DJ57",
                "accession": "GCA_002077945.1",
                "taxid": 1703345,
                "species_taxid": 1703345,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7136,
                "matched_fragments": 326,
                "total_fragments": 2814,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Niastella yeongjuensis",
                "strain": "strain=DSM 17621",
                "accession": "GCA_900110245.1",
                "taxid": 354355,
                "species_taxid": 354355,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6069,
                "matched_fragments": 317,
                "total_fragments": 2814,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pinibacter aurantiacus",
                "strain": "strain=MAH-26",
                "accession": "GCA_019130065.1",
                "taxid": 2851599,
                "species_taxid": 2851599,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2606,
                "matched_fragments": 96,
                "total_fragments": 2814,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Niabella beijingensis",
                "strain": "strain=3A5MI-3",
                "accession": "GCA_020034665.1",
                "taxid": 2872700,
                "species_taxid": 2872700,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0445,
                "matched_fragments": 100,
                "total_fragments": 2814,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chitinophaga hostae",
                "strain": "strain=2R12",
                "accession": "GCA_018224885.1",
                "taxid": 2831022,
                "species_taxid": 2831022,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8443,
                "matched_fragments": 111,
                "total_fragments": 2814,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003555545.1",
                "gtdb_species": "s__Paraflavitalea soli",
                "ani": 100.0,
                "matched_fragments": 2814,
                "total_fragments": 2814,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Paraflavitalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_011759375.1",
                "gtdb_species": "s__Paraflavitalea devenefica",
                "ani": 80.5067,
                "matched_fragments": 1363,
                "total_fragments": 2814,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Paraflavitalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017744515.1",
                "gtdb_species": "s__Paraflavitalea sp017744515",
                "ani": 79.7875,
                "matched_fragments": 1153,
                "total_fragments": 2814,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Paraflavitalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007970185.1",
                "gtdb_species": "s__Pseudobacter ginsenosidimutans",
                "ani": 77.2089,
                "matched_fragments": 347,
                "total_fragments": 2814,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Pseudobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017849455.1",
                "gtdb_species": "s__Pseudobacter sp017849455",
                "ani": 77.1174,
                "matched_fragments": 357,
                "total_fragments": 2814,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Pseudobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000246855.1",
                "gtdb_species": "s__Niastella koreensis",
                "ani": 77.1033,
                "matched_fragments": 326,
                "total_fragments": 2814,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Niastella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003991355.1",
                "gtdb_species": "s__Pseudobacter rhizosphaerae",
                "ani": 76.9985,
                "matched_fragments": 314,
                "total_fragments": 2814,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Pseudobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004341975.1",
                "gtdb_species": "s__Niastella sp004341975",
                "ani": 76.9811,
                "matched_fragments": 315,
                "total_fragments": 2814,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Niastella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001302245.1",
                "gtdb_species": "s__PMP191F sp001302245",
                "ani": 76.8835,
                "matched_fragments": 344,
                "total_fragments": 2814,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__PMP191F",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.37",
                "min_intra_species_ani": "99.37",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_004834005.1",
                "gtdb_species": "s__Niastella caeni",
                "ani": 76.8506,
                "matched_fragments": 328,
                "total_fragments": 2814,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Niastella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002078015.1",
                "gtdb_species": "s__Niastella populi",
                "ani": 76.8403,
                "matched_fragments": 323,
                "total_fragments": 2814,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Niastella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017744805.1",
                "gtdb_species": "s__Pseudobacter sp017744805",
                "ani": 76.8208,
                "matched_fragments": 245,
                "total_fragments": 2814,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Pseudobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017356035.1",
                "gtdb_species": "s__Niastella sp017356035",
                "ani": 76.7764,
                "matched_fragments": 313,
                "total_fragments": 2814,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Niastella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017742245.1",
                "gtdb_species": "s__Niastella sp017742245",
                "ani": 76.7239,
                "matched_fragments": 318,
                "total_fragments": 2814,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Niastella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013327885.1",
                "gtdb_species": "s__Flavisolibacter sp013327885",
                "ani": 76.3343,
                "matched_fragments": 120,
                "total_fragments": 2814,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavisolibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001601815.1",
                "gtdb_species": "s__Flavihumibacter sp001601815",
                "ani": 75.8902,
                "matched_fragments": 106,
                "total_fragments": 2814,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavihumibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Paraflavitalea",
        "soli"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}