{ "type": "genome", "identifier": "GCF_003568825.1", "organism": "Pseudoalteromonas tunicata", "title": "Pseudoalteromonas tunicata", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of New South Wales", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003568825.1", "bioproject": "PRJNA224116", "biosample": "SAMN09780820", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "314281", "species_taxid": "314281", "organism_name": "Pseudoalteromonas tunicata", "infraspecific_name": "strain=D2", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/04", "asm_name": "ASM356882v1", "asm_submitter": "University of New South Wales", "gbrs_paired_asm": "GCA_003568825.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/568/825/GCF_003568825.1_ASM356882v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4967522", "genome_size_ungapped": "4967522", "gc_percent": "40.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003568825.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4360", "protein_coding_gene_count": "4182", "non_coding_gene_count": "147", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-04", "dateModified": "2018-09-04", "datePublished": "2018-09-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudoalteromonas tunicata" ], "sample_taxid": [ "314281" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "NA" ], "sample_host_location_id": [], "data_size": "1.398 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4967522", "Number of Sequences": "2", "Longest Sequences (bp)": "3985138", "N50 (bp)": "3985138", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.9", "Number of CDSs": "4235", "Average Protein Length": "339.6", "Coding Ratio (%)": "86.9", "Number of rRNAs": "31", "Number of tRNAs": "112", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudoalteromonas tunicata", "strain": "strain=D2", "accession": "GCA_003568825.1", "taxid": 314281, "species_taxid": 314281, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1654, "total_fragments": 1655, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudoalteromonas tunicata", "strain": "strain=D2", "accession": "GCA_000153245.1", "taxid": 314281, "species_taxid": 314281, "relation_to_type": "type", "validated": true, "ani": 99.9887, "matched_fragments": 1641, "total_fragments": 1655, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudoalteromonas tunicata", "strain": "strain=D2", "accession": "GCA_002310815.1", "taxid": 314281, "species_taxid": 314281, "relation_to_type": "type", "validated": true, "ani": 99.9867, "matched_fragments": 1647, "total_fragments": 1655, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudoalteromonas ulvae", "strain": "strain=UL12", "accession": "GCA_014925405.1", "taxid": 107327, "species_taxid": 107327, "relation_to_type": "type", "validated": true, "ani": 80.0642, "matched_fragments": 627, "total_fragments": 1655, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas undina", "strain": "strain=DSM 6065", "accession": "GCA_000238275.4", "taxid": 43660, "species_taxid": 43660, "relation_to_type": "type", "validated": true, "ani": 78.7438, "matched_fragments": 244, "total_fragments": 1655, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas arctica", "strain": "strain=A 37-1-2", "accession": "GCA_000238395.4", "taxid": 394751, "species_taxid": 394751, "relation_to_type": "type", "validated": true, "ani": 78.6654, "matched_fragments": 262, "total_fragments": 1655, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas translucida", "strain": "strain=KMM 520", "accession": "GCA_001465295.1", "taxid": 166935, "species_taxid": 166935, "relation_to_type": "type", "validated": true, "ani": 78.6373, "matched_fragments": 254, "total_fragments": 1655, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Providencia manganoxydans", "strain": "strain=LLDRA6", "accession": "GCA_016618195.1", "taxid": 2923283, "species_taxid": 2923283, "relation_to_type": "type", "validated": true, "ani": 78.57, "matched_fragments": 50, "total_fragments": 1655, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas fuliginea", "strain": "strain=KMM 216", "accession": "GCA_000690055.1", "taxid": 1872678, "species_taxid": 1872678, "relation_to_type": "type", "validated": true, "ani": 78.1826, "matched_fragments": 254, "total_fragments": 1655, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas espejiana", "strain": "strain=NBRC 102222", "accession": "GCA_007989585.1", "taxid": 28107, "species_taxid": 28107, "relation_to_type": "type", "validated": true, "ani": 77.9801, "matched_fragments": 226, "total_fragments": 1655, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas gelatinilytica", "strain": "strain=NH153", "accession": "GCA_001641615.1", "taxid": 1703256, "species_taxid": 1703256, "relation_to_type": "type", "validated": true, "ani": 77.8184, "matched_fragments": 261, "total_fragments": 1655, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella olleyana", "strain": "strain=LMG 21437", "accession": "GCA_023283825.1", "taxid": 135626, "species_taxid": 135626, "relation_to_type": "type", "validated": true, "ani": 76.1853, "matched_fragments": 77, "total_fragments": 1655, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002310815.1", "gtdb_species": "s__Pseudoalteromonas tunicata", "ani": 99.9869, "matched_fragments": 1647, "total_fragments": 1655, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": 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"mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900239935.1", "gtdb_species": "s__Pseudoalteromonas carrageenovora", "ani": 78.7737, "matched_fragments": 257, "total_fragments": 1655, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.00", "min_intra_species_ani": "96.44", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.91", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_000238395.3", "gtdb_species": "s__Pseudoalteromonas arctica", "ani": 78.6726, "matched_fragments": 263, "total_fragments": 1655, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.91", "min_intra_species_ani": "96.03", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.80", "num_clustered_genomes": 33, "status": "-" }, { "accession": "GCF_001465295.1", "gtdb_species": "s__Pseudoalteromonas translucida", "ani": 78.5468, "matched_fragments": 251, "total_fragments": 1655, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 96.0242, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004792295.1", "gtdb_species": "s__Pseudoalteromonas lipolytica_C", "ani": 78.4951, "matched_fragments": 256, "total_fragments": 1655, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.42", "min_intra_species_ani": "98.24", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.68", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_004328665.1", "gtdb_species": "s__Pseudoalteromonas sp001974855", "ani": 78.371, "matched_fragments": 247, "total_fragments": 1655, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.16", "min_intra_species_ani": "95.35", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.83", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_000788395.1", "gtdb_species": "s__Pseudoalteromonas piratica", "ani": 78.3237, "matched_fragments": 226, "total_fragments": 1655, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", 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