{ "type": "genome", "identifier": "GCF_003570705.1", "organism": "Mesobacillus zeae", "title": "Mesobacillus zeae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Jet Propulsion Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003570705.1", "bioproject": "PRJNA224116", "biosample": "SAMN09934869", "wgs_master": "QWVT00000000.1", "refseq_category": "reference genome", "taxid": "1917180", "species_taxid": "1917180", "organism_name": "Mesobacillus zeae", "infraspecific_name": "strain=JJ-247", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/14", "asm_name": "ASM357070v1", "asm_submitter": "Jet Propulsion Laboratory", "gbrs_paired_asm": "GCA_003570705.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/570/705/GCF_003570705.1_ASM357070v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4242481", "genome_size_ungapped": "4242481", "gc_percent": "43.000000", "replicon_count": "0", "scaffold_count": "79", "contig_count": "79", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003570705.1-RS_2024_09_18", "annotation_date": "2024-09-18", "total_gene_count": "4453", "protein_coding_gene_count": "4243", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-14", "dateModified": "2018-09-14", "datePublished": "2018-09-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Mesobacillus zeae" ], "sample_taxid": [ "1917180" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "1.212 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4242481", "Number of Sequences": "79", "Longest Sequences (bp)": "445025", "N50 (bp)": "117514", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.2", "Number of CDSs": "4370", "Average Protein Length": "266.9", "Coding Ratio (%)": "82.5", "Number of rRNAs": "1", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mesobacillus zeae", "strain": "strain=JJ-247", "accession": "GCA_003570705.1", "taxid": 1917180, "species_taxid": 1917180, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1372, "total_fragments": 1376, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mesobacillus zeae", "strain": "strain=JJ-247", "accession": "GCA_013618945.1", "taxid": 1917180, "species_taxid": 1917180, "relation_to_type": "type", "validated": true, "ani": 99.9991, "matched_fragments": 1376, "total_fragments": 1376, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cytobacillus solani", "strain": "strain=FJAT-18043", "accession": "GCA_001420595.1", "taxid": 1637975, "species_taxid": 1637975, "relation_to_type": "type", "validated": true, "ani": 78.7084, "matched_fragments": 123, "total_fragments": 1376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesobacillus harenae", "strain": "strain=Y40", "accession": "GCA_013343715.1", "taxid": 2213203, "species_taxid": 2213203, "relation_to_type": "type", "validated": true, "ani": 78.0611, "matched_fragments": 139, "total_fragments": 1376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesobacillus subterraneus", "strain": "strain=DSM 13966", "accession": "GCA_003937825.1", "taxid": 285983, "species_taxid": 285983, "relation_to_type": "suspected-type", "validated": true, "ani": 77.9127, "matched_fragments": 197, "total_fragments": 1376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus massiliglaciei", "strain": "strain=Marseille-P2600", "accession": "GCA_900098925.1", "taxid": 1816693, "species_taxid": 1816693, "relation_to_type": "type", "validated": true, "ani": 77.8158, "matched_fragments": 65, "total_fragments": 1376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesobacillus foraminis", "strain": "strain=CV53", "accession": "GCA_013618915.1", "taxid": 279826, "species_taxid": 279826, "relation_to_type": "type", "validated": true, "ani": 77.7309, "matched_fragments": 209, "total_fragments": 1376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus kokaensis", "strain": "strain=LOB 377", "accession": "GCA_014656545.1", "taxid": 2759023, "species_taxid": 2759023, "relation_to_type": "type", "validated": true, "ani": 77.694, "matched_fragments": 94, "total_fragments": 1376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesobacillus foraminis", "strain": "strain=CV53", "accession": "GCA_004340465.1", "taxid": 279826, "species_taxid": 279826, "relation_to_type": "type", "validated": true, "ani": 77.6828, "matched_fragments": 211, "total_fragments": 1376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesobacillus selenatarsenatis", "strain": "strain=SF-1", "accession": "GCA_000813125.1", "taxid": 388741, "species_taxid": 388741, "relation_to_type": "type", "validated": true, "ani": 77.6723, "matched_fragments": 184, "total_fragments": 1376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus novalis", "strain": "strain=FJAT-14227", "accession": "GCA_001636395.1", "taxid": 220687, "species_taxid": 220687, 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"matched_fragments": 135, "total_fragments": 1376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus rhizophilus", "strain": "strain=FJAT-49825", "accession": "GCA_018343535.1", "taxid": 2833579, "species_taxid": 2833579, "relation_to_type": "type", "validated": true, "ani": 77.1851, "matched_fragments": 113, "total_fragments": 1376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus subtilis subsp. subtilis", "strain": "strain=168", "accession": "GCA_024917115.1", "taxid": 135461, "species_taxid": 1423, "relation_to_type": "type", "validated": true, "ani": 77.0458, "matched_fragments": 62, "total_fragments": 1376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Falsibacillus albus", "strain": "strain=GY 10110", "accession": "GCA_003668575.1", "taxid": 2478915, "species_taxid": 2478915, "relation_to_type": "type", "validated": true, "ani": 77.0381, "matched_fragments": 76, "total_fragments": 1376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus tequilensis", "strain": "strain=NCTC13306", "accession": "GCA_900445435.1", "taxid": 227866, "species_taxid": 227866, "relation_to_type": "type", "validated": true, "ani": 77.0097, "matched_fragments": 51, "total_fragments": 1376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cytobacillus firmus", "strain": "strain=NBRC 15306", "accession": "GCA_001591465.1", "taxid": 1399, "species_taxid": 1399, "relation_to_type": "suspected-type", "validated": true, "ani": 76.9301, "matched_fragments": 131, "total_fragments": 1376, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus kandeliae", "strain": "strain=GX 13764", "accession": "GCA_021166585.1", "taxid": 2900151, "species_taxid": 2900151, "relation_to_type": "type", "validated": true, "ani": 76.7218, "matched_fragments": 73, "total_fragments": 1376, "ani_threshold": 95, "status": "below_threshold" } ], 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"gtdb_species": "s__Mesobacillus sp018613315", "ani": 77.7437, "matched_fragments": 176, "total_fragments": 1376, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Mesobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002860125.1", "gtdb_species": "s__Bacillus_BJ canaveralius", "ani": 77.7315, "matched_fragments": 98, "total_fragments": 1376, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Bacillus_BJ", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.48", "min_intra_species_ani": "99.12", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_018613055.1", "gtdb_species": "s__Mesobacillus sp018613055", "ani": 77.6832, 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"min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008180615.1", "gtdb_species": "s__Bacillus_BM vietnamensis_A", "ani": 77.4497, "matched_fragments": 52, "total_fragments": 1376, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_B;g__Bacillus_BM", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.11", "min_intra_species_ani": "98.11", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000473245.1", "gtdb_species": "s__Bacillus_AB infantis", "ani": 77.2018, "matched_fragments": 126, "total_fragments": 1376, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Bacillus_AB", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.14", "min_intra_species_ani": "95.38", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.87", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_018343535.1", "gtdb_species": "s__Neobacillus sp018343535", "ani": 77.16, "matched_fragments": 115, "total_fragments": 1376, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.05", "min_intra_species_ani": "99.05", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003316765.1", "gtdb_species": "s__Bacillus_BM sp003316765", "ani": 77.0774, "matched_fragments": 73, "total_fragments": 1376, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Bacillaceae_B;g__Bacillus_BM", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.55", "min_intra_species_ani": "98.55", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" 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