{ "type": "genome", "identifier": "GCF_003570715.1", "organism": "Gemmobacter lutimaris", "title": "Gemmobacter lutimaris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003570715.1", "bioproject": "PRJNA224116", "biosample": "SAMN09939799", "wgs_master": "QXXQ00000000.1", "refseq_category": "reference genome", "taxid": "2306023", "species_taxid": "2306023", "organism_name": "Gemmobacter lutimaris", "infraspecific_name": "strain=YJ-T1-11", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/14", "asm_name": "ASM357071v1", "asm_submitter": "Korea University", "gbrs_paired_asm": "GCA_003570715.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/570/715/GCF_003570715.1_ASM357071v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4661677", "genome_size_ungapped": "4661377", "gc_percent": "64.500000", "replicon_count": "0", "scaffold_count": "76", "contig_count": "76", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003570715.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "4577", "protein_coding_gene_count": "4467", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-14", "dateModified": "2018-09-14", "datePublished": "2018-09-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Gemmobacter lutimaris" ], "sample_taxid": [ "2306023" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Yeongjong-do" ], "sample_host_location_id": [], "data_size": "1.282 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4661677", "Number of Sequences": "76", "Longest Sequences (bp)": "654821", "N50 (bp)": "300250", "Gap Ratio (%)": "0.006435", "GCcontent (%)": "64.4", "Number of CDSs": "4476", "Average Protein Length": "314.8", "Coding Ratio (%)": "90.7", "Number of rRNAs": "3", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gemmobacter lutimaris", "strain": "strain=YJ-T1-11", "accession": "GCA_003570715.1", "taxid": 2306023, "species_taxid": 2306023, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1521, "total_fragments": 1524, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gemmobacter caeni", "strain": "strain=DSM 21823", "accession": "GCA_003054195.1", "taxid": 589035, "species_taxid": 589035, "relation_to_type": "type", "validated": true, "ani": 91.4731, "matched_fragments": 1181, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter caeni", "strain": "strain=CGMCC 1.7745", "accession": "GCA_007830625.1", "taxid": 589035, "species_taxid": 589035, "relation_to_type": "type", "validated": true, "ani": 91.3513, "matched_fragments": 1189, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter caeruleus", "strain": "strain=N8", "accession": "GCA_008271655.1", "taxid": 2595004, "species_taxid": 2595004, "relation_to_type": "type", "validated": true, "ani": 83.5542, "matched_fragments": 896, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter aquatilis", "strain": "strain=DSM 3857", "accession": "GCA_900110025.1", "taxid": 933059, "species_taxid": 933059, "relation_to_type": "type", "validated": true, "ani": 82.2577, "matched_fragments": 864, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter fulva", "strain": "strain=con5", "accession": "GCA_018798885.1", "taxid": 2840474, "species_taxid": 2840474, "relation_to_type": "type", "validated": true, "ani": 81.6828, "matched_fragments": 898, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter lanyuensis", "strain": "strain=KCTC 23714", "accession": "GCA_014652355.1", "taxid": 1054497, "species_taxid": 1054497, "relation_to_type": "type", "validated": true, "ani": 81.3904, "matched_fragments": 801, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter serpentinus", "strain": "strain=HB-1", "accession": "GCA_008973825.1", "taxid": 2652247, "species_taxid": 2652247, "relation_to_type": "type", "validated": true, "ani": 81.3037, "matched_fragments": 769, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_009908265.2", "taxid": 2852097, "species_taxid": 2852097, "relation_to_type": "type", "validated": true, "ani": 79.9061, "matched_fragments": 640, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_019130055.1", "taxid": 2852097, "species_taxid": 2852097, "relation_to_type": "type", "validated": true, "ani": 79.8937, "matched_fragments": 642, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter ovatus", "strain": "strain=JA234", "accession": "GCA_900207575.1", "taxid": 439529, "species_taxid": 439529, "relation_to_type": "type", "validated": true, "ani": 79.5983, "matched_fragments": 585, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tabrizicola algicola", "strain": "strain=ETT8", "accession": "GCA_010915705.1", "taxid": 2709381, "species_taxid": 2709381, "relation_to_type": "type", "validated": true, "ani": 79.4233, "matched_fragments": 583, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter azotoformans", "strain": "strain=KA25", "accession": "GCA_003050905.1", "taxid": 43057, "species_taxid": 43057, "relation_to_type": "type", "validated": true, "ani": 78.8707, "matched_fragments": 526, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003570715.1", "gtdb_species": "s__Gemmobacter lutimaris", "ani": 100.0, 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