{ "type": "genome", "identifier": "GCF_003570905.1", "organism": "Cohnella faecalis", "title": "Cohnella faecalis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003570905.1", "bioproject": "PRJNA224116", "biosample": "SAMN09976703", "wgs_master": "QXJM00000000.1", "refseq_category": "na", "taxid": "2315694", "species_taxid": "2315694", "organism_name": "Cohnella faecalis", "infraspecific_name": "strain=K2E09-144", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/14", "asm_name": "ASM357090v1", "asm_submitter": "Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_003570905.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/570/905/GCF_003570905.1_ASM357090v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6426246", "genome_size_ungapped": "6426246", "gc_percent": "53.500000", "replicon_count": "0", "scaffold_count": "65", "contig_count": "65", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-17", "total_gene_count": "6071", "protein_coding_gene_count": "5566", "non_coding_gene_count": "95", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-14", "dateModified": "2018-09-14", "datePublished": "2018-09-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Cohnella faecalis" ], "sample_taxid": [ "2315694" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Guizhou" ], "sample_host_location_id": [], "data_size": "1.783 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 85.65, "contamination": 14.58, "strain_heterogeneity": 91.67, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6426246", "Number of Sequences": "65", "Longest Sequences (bp)": "1814954", "N50 (bp)": "363239", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.3", "Number of CDSs": "6257", "Average Protein Length": "288.0", "Coding Ratio (%)": "84.1", "Number of rRNAs": "23", "Number of tRNAs": "71", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cohnella faecalis", "strain": "strain=K2E09-144", "accession": "GCA_003570905.1", "taxid": 2315694, "species_taxid": 2315694, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2092, "total_fragments": 2106, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cohnella candidum", "strain": "strain=18JY8-7", "accession": "GCA_003713065.1", "taxid": 2674991, "species_taxid": 2674991, "relation_to_type": "type", "validated": true, "ani": 78.7741, "matched_fragments": 361, "total_fragments": 2106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella panacarvi", "strain": "strain=Gsoil 349", "accession": "GCA_000515335.1", "taxid": 400776, "species_taxid": 400776, "relation_to_type": "type", "validated": true, "ani": 78.2641, "matched_fragments": 336, "total_fragments": 2106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella thermotolerans", "strain": "strain=DSM 17683", "accession": "GCA_000429825.1", "taxid": 329858, "species_taxid": 329858, "relation_to_type": "type", "validated": true, "ani": 78.1493, "matched_fragments": 352, "total_fragments": 2106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella pontilimi", "strain": "strain=CAU 1483", "accession": "GCA_005049045.1", "taxid": 2564100, "species_taxid": 2564100, "relation_to_type": "type", "validated": true, "ani": 77.9154, "matched_fragments": 278, "total_fragments": 2106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella herbarum", "strain": "strain=MFER-1", "accession": "GCA_012849095.1", "taxid": 2728023, "species_taxid": 2728023, "relation_to_type": "type", "validated": true, "ani": 77.9079, "matched_fragments": 319, "total_fragments": 2106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella lubricantis", "strain": "strain=DSM 103658", "accession": "GCA_014212015.1", "taxid": 2163172, "species_taxid": 2163172, "relation_to_type": "type", "validated": true, "ani": 77.9076, "matched_fragments": 260, "total_fragments": 2106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella lubricantis", "strain": "strain=DSM 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true, "ani": 76.4859, "matched_fragments": 66, "total_fragments": 2106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus rhizophilus", "strain": "strain=7197", "accession": "GCA_003854965.1", "taxid": 1850366, "species_taxid": 1850366, "relation_to_type": "type", "validated": true, "ani": 76.3774, "matched_fragments": 105, "total_fragments": 2106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus alkaliterrae", "strain": "strain=DSM 17040", "accession": "GCA_021532375.1", "taxid": 320909, "species_taxid": 320909, "relation_to_type": "type", "validated": true, "ani": 76.3369, "matched_fragments": 99, "total_fragments": 2106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus caui", "strain": "strain=81-11", "accession": "GCA_019904135.1", "taxid": 2873927, "species_taxid": 2873927, "relation_to_type": "type", "validated": true, "ani": 76.3252, "matched_fragments": 82, 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