{
    "type": "genome",
    "identifier": "GCF_003572535.1",
    "organism": "Shigella boydii",
    "title": "Shigella boydii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "FDA Center for Food Safety and Applied Nutrition",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003572535.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03291467",
        "wgs_master": "QWSE00000000.1",
        "refseq_category": "na",
        "taxid": "621",
        "species_taxid": "621",
        "organism_name": "Shigella boydii",
        "infraspecific_name": "strain=ATCC 8700",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/09/17",
        "asm_name": "ASM357253v1",
        "asm_submitter": "FDA Center for Food Safety and Applied Nutrition",
        "gbrs_paired_asm": "GCA_003572535.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/572/535/GCF_003572535.1_ASM357253v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4106788",
        "genome_size_ungapped": "4106788",
        "gc_percent": "51.000000",
        "replicon_count": "0",
        "scaffold_count": "626",
        "contig_count": "626",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003572535.1-RS_2024_12_12",
        "annotation_date": "2024-12-12",
        "total_gene_count": "4362",
        "protein_coding_gene_count": "3668",
        "non_coding_gene_count": "66",
        "pubmed_id": "30533843"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-09-17",
    "dateModified": "2018-09-17",
    "datePublished": "2018-09-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Shigella boydii"
        ],
        "sample_taxid": [
            "621"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "missing"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA",
            "USA:VA"
        ],
        "sample_host_location_id": [],
        "data_size": "1.187 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4106788",
        "Number of Sequences": "626",
        "Longest Sequences (bp)": "44654",
        "N50 (bp)": "14520",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "50.9",
        "Number of CDSs": "3776",
        "Average Protein Length": "290.9",
        "Coding Ratio (%)": "80.2",
        "Number of rRNAs": "1",
        "Number of tRNAs": "55",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Shigella boydii",
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                "species_taxid": 621,
                "relation_to_type": "type",
                "validated": true,
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            },
            {
                "organism_name": "Shigella boydii",
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                "status": "indistinguishable"
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            {
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                "status": "indistinguishable"
            },
            {
                "organism_name": "Shigella sonnei",
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                "species_taxid": 624,
                "relation_to_type": "type",
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                "ani": 98.4865,
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                "ani_threshold": 95,
                "status": "indistinguishable"
            },
            {
                "organism_name": "Shigella sonnei",
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                "ani": 98.4469,
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                "ani_threshold": 95,
                "status": "indistinguishable"
            },
            {
                "organism_name": "Shigella flexneri 2a",
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                "accession": "GCA_002950215.1",
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                "species_taxid": 623,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "indistinguishable"
            },
            {
                "organism_name": "Escherichia coli",
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                "species_taxid": 562,
                "relation_to_type": "neotype",
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            },
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                "organism_name": "Escherichia coli",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Escherichia albertii",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudocitrobacter corydidari",
                "strain": "",
                "accession": "GCA_021172065.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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                "accession": "GCF_003697165.2",
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}