{ "type": "genome", "identifier": "GCF_003573545.1", "organism": "Mariniphaga sediminis", "title": "Mariniphaga sediminis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "shandong university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003573545.1", "bioproject": "PRJNA224116", "biosample": "SAMN09901207", "wgs_master": "QWET00000000.1", "refseq_category": "reference genome", "taxid": "1628158", "species_taxid": "1628158", "organism_name": "Mariniphaga sediminis", "infraspecific_name": "strain=SY21", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/18", "asm_name": "ASM357354v1", "asm_submitter": "shandong university", "gbrs_paired_asm": "GCA_003573545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/573/545/GCF_003573545.1_ASM357354v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5826160", "genome_size_ungapped": "5826160", "gc_percent": "41.500000", "replicon_count": "0", "scaffold_count": "70", "contig_count": "70", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003573545.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4621", "protein_coding_gene_count": "4550", "non_coding_gene_count": "54", "pubmed_id": "26012581" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-18", "dateModified": "2018-09-18", "datePublished": "2018-09-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Mariniphaga sediminis" ], "sample_taxid": [ "1628158" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Weihai" ], "sample_host_location_id": [], "data_size": "1.649 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5826160", "Number of Sequences": "70", "Longest Sequences (bp)": "639113", "N50 (bp)": "302260", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.7", "Number of CDSs": "4485", "Average Protein Length": "382.3", "Coding Ratio (%)": "88.3", "Number of rRNAs": "5", "Number of tRNAs": "44", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mariniphaga sediminis", "strain": "strain=SY21", "accession": "GCA_003573545.1", "taxid": 1628158, "species_taxid": 1628158, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1884, "total_fragments": 1908, "ani_threshold": 95, "status": 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