{ "type": "genome", "identifier": "GCF_003574395.1", "organism": "Tabrizicola thermarum", "title": "Tabrizicola thermarum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SUN YAT-SEN UNIVERSITY", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003574395.1", "bioproject": "PRJNA224116", "biosample": "SAMN09478189", "wgs_master": "QMJY00000000.1", "refseq_category": "reference genome", "taxid": "2670345", "species_taxid": "2670345", "organism_name": "Tabrizicola thermarum", "infraspecific_name": "strain=YIM 73036", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/18", "asm_name": "ASM357439v1", "asm_submitter": "SUN YAT-SEN UNIVERSITY", "gbrs_paired_asm": "GCA_003574395.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/574/395/GCF_003574395.1_ASM357439v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3653867", "genome_size_ungapped": "3653860", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "76", "contig_count": "83", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003574395.1-RS_2024_07_08", "annotation_date": "2024-07-08", "total_gene_count": "3695", "protein_coding_gene_count": "3589", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-18", "dateModified": "2018-09-18", "datePublished": "2018-09-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Tabrizicola thermarum" ], "sample_taxid": [ "2670345" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Tibet Geothermal Area" ], "sample_host_location_id": [], "data_size": "1.001 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3653867", "Number of Sequences": "76", "Longest Sequences (bp)": "572565", "N50 (bp)": "175031", "Gap Ratio (%)": "0.000192", "GCcontent (%)": "66.8", "Number of CDSs": "3643", "Average Protein Length": "303.9", "Coding Ratio (%)": "90.9", "Number of rRNAs": "3", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhodobacter thermarum", "strain": "strain=YIM 73036", "accession": "GCA_003574395.1", "taxid": 2670345, "species_taxid": 2670345, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1187, "total_fragments": 1188, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rhodobacter calidifons", "strain": "strain=M37P", "accession": "GCA_011174775.1", "taxid": 2715277, "species_taxid": 2715277, "relation_to_type": "type", "validated": true, "ani": 90.2769, "matched_fragments": 987, "total_fragments": 1188, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter flagellatus", "strain": "strain=SYSU G03088", "accession": "GCA_008271465.1", "taxid": 2593021, "species_taxid": 2593021, "relation_to_type": "type", "validated": true, "ani": 86.1737, "matched_fragments": 990, "total_fragments": 1188, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter changlensis", "strain": "strain=JA139", "accession": "GCA_003034985.1", "taxid": 402884, "species_taxid": 402884, "relation_to_type": "type", "validated": true, "ani": 80.2151, "matched_fragments": 579, "total_fragments": 1188, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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