{ "type": "genome", "identifier": "GCF_003574465.1", "organism": "Methylobacterium crusticola", "title": "Methylobacterium crusticola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "inner mongolia ariculture university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003574465.1", "bioproject": "PRJNA224116", "biosample": "SAMN09644085", "wgs_master": "QOWC00000000.1", "refseq_category": "reference genome", "taxid": "1697972", "species_taxid": "1697972", "organism_name": "Methylobacterium crusticola", "infraspecific_name": "strain=MIMD6", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/18", "asm_name": "ASM357446v1", "asm_submitter": "inner mongolia ariculture university", "gbrs_paired_asm": "GCA_003574465.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/574/465/GCF_003574465.1_ASM357446v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7502080", "genome_size_ungapped": "7501809", "gc_percent": "73.000000", "replicon_count": "0", "scaffold_count": "463", "contig_count": "553", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003574465.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "7150", "protein_coding_gene_count": "6811", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-18", "dateModified": "2018-09-18", "datePublished": "2018-09-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Methylobacterium crusticola" ], "sample_taxid": [ "1697972" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Huhhot" ], "sample_host_location_id": [], "data_size": "2.004 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7502080", "Number of Sequences": "463", "Longest Sequences (bp)": "133245", "N50 (bp)": "33995", "Gap Ratio (%)": "0.003612", "GCcontent (%)": "73.0", "Number of CDSs": "6764", "Average Protein Length": "300.6", "Coding Ratio (%)": "81.3", "Number of rRNAs": "0", "Number of tRNAs": "73", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methylobacterium crusticola", "strain": "strain=MIMD6", "accession": "GCA_003574465.1", "taxid": 1697972, "species_taxid": 1697972, 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"ani": 85.3188, "matched_fragments": 1356, "total_fragments": 2295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium nonmethylotrophicum", "strain": "strain=6HR-1", "accession": "GCA_004745635.1", "taxid": 1141884, "species_taxid": 1141884, "relation_to_type": "type", "validated": true, "ani": 85.2734, "matched_fragments": 1484, "total_fragments": 2295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium ajmalii", "strain": "strain=IF7SW-B2", "accession": "GCA_016613415.1", "taxid": 2738439, "species_taxid": 2738439, "relation_to_type": "type", "validated": true, "ani": 84.9035, "matched_fragments": 1304, "total_fragments": 2295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium frigidaeris", "strain": "strain=JCM 32048", "accession": "GCA_022179185.1", "taxid": 2038277, "species_taxid": 2038277, "relation_to_type": "type", "validated": true, "ani": 84.828, "matched_fragments": 1478, "total_fragments": 2295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium tarhaniae", "strain": "strain=DSM 25844", "accession": "GCA_001043955.1", "taxid": 1187852, "species_taxid": 1187852, "relation_to_type": "type", "validated": true, "ani": 84.8151, "matched_fragments": 1276, "total_fragments": 2295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium terricola", "strain": "strain=17Sr1-39", "accession": "GCA_006151805.1", "taxid": 2583531, "species_taxid": 2583531, "relation_to_type": "type", "validated": true, "ani": 84.7228, "matched_fragments": 1459, "total_fragments": 2295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium currus", "strain": "strain=PR1016A", "accession": "GCA_003058325.1", "taxid": 2051553, "species_taxid": 2051553, "relation_to_type": "type", "validated": true, "ani": 84.6633, "matched_fragments": 1421, "total_fragments": 2295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium frigidaeris", "strain": "strain=IER25-16", "accession": "GCA_002759055.1", "taxid": 2038277, "species_taxid": 2038277, "relation_to_type": "type", "validated": true, "ani": 84.6079, "matched_fragments": 949, "total_fragments": 2295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium oryzihabitans", "strain": "strain=TER-1", "accession": "GCA_004004555.2", "taxid": 2499852, "species_taxid": 2499852, "relation_to_type": "type", "validated": true, "ani": 84.0877, "matched_fragments": 1318, "total_fragments": 2295, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003574465.1", "gtdb_species": "s__Methylobacterium crusticola", "ani": 100.0, "matched_fragments": 2269, "total_fragments": 2295, "gtdb_taxonomy": 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