{ "type": "genome", "identifier": "GCF_003574655.1", "organism": "Cohaesibacter haloalkalitolerans", "title": "Cohaesibacter haloalkalitolerans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Third Institute of Oceanography, State Oceanic Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003574655.1", "bioproject": "PRJNA224116", "biosample": "SAMN09580698", "wgs_master": "QNUM00000000.1", "refseq_category": "reference genome", "taxid": "1162980", "species_taxid": "1162980", "organism_name": "Cohaesibacter haloalkalitolerans", "infraspecific_name": "strain=JC131", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/18", "asm_name": "ASM357465v1", "asm_submitter": "Third Institute of Oceanography, State Oceanic Administration", "gbrs_paired_asm": "GCA_003574655.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/574/655/GCF_003574655.1_ASM357465v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5014206", "genome_size_ungapped": "5014206", "gc_percent": "57.000000", "replicon_count": "0", "scaffold_count": "24", "contig_count": "24", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003574655.1-RS_2024_05_01", "annotation_date": "2024-05-01", "total_gene_count": "4412", "protein_coding_gene_count": "4309", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-18", "dateModified": "2018-09-18", "datePublished": "2018-09-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Cohaesibacter haloalkalitolerans" ], "sample_taxid": [ "1162980" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India" ], "sample_host_location_id": [], "data_size": "1.416 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5014206", "Number of Sequences": "24", "Longest Sequences (bp)": "899836", "N50 (bp)": "551965", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.1", "Number of CDSs": "4443", "Average Protein Length": "319.1", "Coding Ratio (%)": "84.8", "Number of rRNAs": "3", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cohaesibacter haloalkalitolerans", "strain": "strain=JC131", "accession": "GCA_003574655.1", "taxid": 1162980, "species_taxid": 1162980, 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