{ "type": "genome", "identifier": "GCF_003575965.1", "organism": "Pseudooceanicola sediminis", "title": "Pseudooceanicola sediminis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Qingdao Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003575965.1", "bioproject": "PRJNA224116", "biosample": "SAMN09269650", "wgs_master": "QWJJ00000000.1", "refseq_category": "reference genome", "taxid": "2211117", "species_taxid": "2211117", "organism_name": "Pseudooceanicola sediminis", "infraspecific_name": "strain=CY03", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/19", "asm_name": "ASM357596v1", "asm_submitter": "Qingdao Agricultural University", "gbrs_paired_asm": "GCA_003575965.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/575/965/GCF_003575965.1_ASM357596v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4445201", "genome_size_ungapped": "4444947", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "55", "contig_count": "55", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003575965.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "4114", "protein_coding_gene_count": "4030", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-19", "dateModified": "2018-09-19", "datePublished": "2018-09-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudooceanicola sediminis" ], "sample_taxid": [ "2211117" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Yellow Sea" ], "sample_host_location_id": [], "data_size": "1.235 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4445201", "Number of Sequences": "55", "Longest Sequences (bp)": "429284", "N50 (bp)": "222940", "Gap Ratio (%)": "0.005714", "GCcontent (%)": "63.7", "Number of CDSs": "4087", "Average Protein Length": "316.3", "Coding Ratio (%)": "87.2", "Number of rRNAs": "6", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudopuniceibacterium sediminis", "strain": "strain=CY03", "accession": "GCA_003575965.1", "taxid": 2211117, "species_taxid": 2211117, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 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95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola antarcticus", "strain": "strain=CGMCC 1.12662", "accession": "GCA_900215355.1", "taxid": 1247613, "species_taxid": 1247613, "relation_to_type": "type", "validated": true, "ani": 79.8488, "matched_fragments": 636, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola endophyticus", "strain": "strain=CBS1P-1", "accession": "GCA_018760365.1", "taxid": 2841273, "species_taxid": 2841273, "relation_to_type": "type", "validated": true, "ani": 79.6532, "matched_fragments": 623, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola marinus", "strain": "strain=CECT 7751", "accession": "GCA_900172385.1", "taxid": 396013, "species_taxid": 396013, "relation_to_type": "type", "validated": true, "ani": 79.4086, "matched_fragments": 632, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola marinus", "strain": "strain=LMG 23705", "accession": "GCA_002786295.1", "taxid": 396013, "species_taxid": 396013, "relation_to_type": "type", "validated": true, "ani": 79.4058, "matched_fragments": 629, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivivens aquimaris", "strain": "strain=GSB7", "accession": "GCA_015220045.1", "taxid": 2774876, "species_taxid": 2774876, "relation_to_type": "type", "validated": true, "ani": 79.2634, "matched_fragments": 249, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola aestuarii", "strain": "strain=E2-1", "accession": "GCA_010614805.1", "taxid": 2697319, "species_taxid": 2697319, "relation_to_type": "type", "validated": true, "ani": 78.6792, "matched_fragments": 490, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola nanhaiensis", "strain": "strain=DSM 18065", "accession": "GCA_000688295.1", "taxid": 375761, "species_taxid": 375761, "relation_to_type": "type", "validated": true, "ani": 78.5669, "matched_fragments": 479, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius mangrovi", "strain": "strain=GS-10", "accession": "GCA_009857745.1", "taxid": 2692236, "species_taxid": 2692236, "relation_to_type": "type", "validated": true, "ani": 78.4493, "matched_fragments": 462, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yangia pacifica", "strain": "strain=DSM 26894", "accession": "GCA_900116195.1", "taxid": 311180, "species_taxid": 311180, "relation_to_type": "suspected-type", "validated": true, "ani": 78.1837, "matched_fragments": 419, "total_fragments": 1459, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yangia pacifica", "strain": "strain=CGMCC 1.3455", "accession": 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