{ "type": "genome", "identifier": "GCF_003575975.1", "organism": "Galactobacter valiniphilus", "title": "Galactobacter valiniphilus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Universitaet Bonn", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003575975.1", "bioproject": "PRJNA224116", "biosample": "SAMN09721487", "wgs_master": "QQXK00000000.1", "refseq_category": "reference genome", "taxid": "2676122", "species_taxid": "2676122", "organism_name": "Galactobacter valiniphilus", "infraspecific_name": "strain=JZ R-35", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/19", "asm_name": "ASM357597v1", "asm_submitter": "Universitaet Bonn", "gbrs_paired_asm": "GCA_003575975.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/575/975/GCF_003575975.1_ASM357597v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3416165", "genome_size_ungapped": "3416165", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "99", "contig_count": "99", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003575975.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3242", "protein_coding_gene_count": "3108", "non_coding_gene_count": "67", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-19", "dateModified": "2018-09-19", "datePublished": "2018-09-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Galactobacter valiniphilus" ], "sample_taxid": [ "2676122" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany:NRW" ], "sample_host_location_id": [], "data_size": "0.931 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3416165", "Number of Sequences": "99", "Longest Sequences (bp)": "196889", "N50 (bp)": "102793", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.6", "Number of CDSs": "3212", "Average Protein Length": "313.6", "Coding Ratio (%)": "88.5", "Number of rRNAs": "3", "Number of tRNAs": "66", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Galactobacter valiniphilus", "strain": "strain=JZ R-35", "accession": "GCA_003575975.1", "taxid": 2676122, "species_taxid": 2676122, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1095, "total_fragments": 1098, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Galactobacter caseinivorans", "strain": "strain=JZ R-183", "accession": "GCA_003640665.1", "taxid": 2676123, "species_taxid": 2676123, "relation_to_type": "type", "validated": true, "ani": 80.4609, "matched_fragments": 507, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micrococcus luteus", "strain": "strain=ATCC 4698", "accession": "GCA_003417425.1", "taxid": 1270, "species_taxid": 1270, "relation_to_type": "type", "validated": true, "ani": 79.0643, "matched_fragments": 271, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micrococcus luteus", "strain": "strain=ATCC 4698", "accession": "GCA_008868275.1", "taxid": 1270, "species_taxid": 1270, "relation_to_type": "type", "validated": true, "ani": 79.0108, "matched_fragments": 299, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micrococcus endophyticus", "strain": "strain=DSM 17945", "accession": "GCA_014205115.1", "taxid": 455343, "species_taxid": 455343, "relation_to_type": "type", "validated": true, "ani": 78.8177, "matched_fragments": 357, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micrococcus luteus", "strain": "strain=NCTC2665", "accession": "GCA_900475555.1", "taxid": 1270, "species_taxid": 1270, "relation_to_type": "type", "validated": true, "ani": 78.8075, "matched_fragments": 331, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micrococcus lylae", "strain": "strain=NBRC 15355", "accession": "GCA_001570885.1", "taxid": 1273, "species_taxid": 1273, "relation_to_type": "type", "validated": true, "ani": 78.7957, "matched_fragments": 309, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zhihengliuella halotolerans", "strain": "strain=DSM 17364", "accession": "GCA_004217565.1", "taxid": 370736, "species_taxid": 370736, "relation_to_type": "type", "validated": true, "ani": 78.7714, "matched_fragments": 333, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paeniglutamicibacter kerguelensis", "strain": "strain=DSM 15797", "accession": "GCA_017876535.1", "taxid": 254788, "species_taxid": 254788, "relation_to_type": "type", "validated": true, "ani": 78.6183, "matched_fragments": 326, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zhihengliuella salsuginis", "strain": "strain=KCTC 19466", "accession": "GCA_014651715.1", "taxid": 578222, "species_taxid": 578222, "relation_to_type": "type", "validated": true, "ani": 78.6113, "matched_fragments": 367, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter mobilis", "strain": "strain=E918", "accession": "GCA_012395835.1", "taxid": 2724944, "species_taxid": 2724944, "relation_to_type": "type", "validated": true, "ani": 78.2836, "matched_fragments": 303, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citricoccus zhacaiensis", "strain": "strain=CGMCC 1.7064", "accession": "GCA_014645315.1", "taxid": 489142, "species_taxid": 489142, "relation_to_type": "type", "validated": true, "ani": 78.2692, "matched_fragments": 269, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter jiangjiafuii", "strain": "strain=zg-ZUI227", "accession": "GCA_018622995.1", "taxid": 2817475, "species_taxid": 2817475, "relation_to_type": "type", "validated": true, "ani": 78.0621, "matched_fragments": 238, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kocuria indica", "strain": "strain=DSM 25126", "accession": "GCA_002237805.1", "taxid": 1049583, "species_taxid": 1049583, "relation_to_type": "type", "validated": true, "ani": 78.0583, "matched_fragments": 216, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kocuria indica", "strain": "strain=NIO-1021", "accession": "GCA_900177335.1", "taxid": 1049583, "species_taxid": 1049583, "relation_to_type": "type", "validated": true, "ani": 78.0419, "matched_fragments": 217, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rothia kristinae", "strain": "strain=FDAARGOS_864", "accession": "GCA_016028855.1", "taxid": 37923, "species_taxid": 37923, "relation_to_type": "type", "validated": true, "ani": 78.0115, "matched_fragments": 230, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter jiangjiafuii", "strain": "strain=zg-ZUI227", "accession": "GCA_017898065.1", "taxid": 2817475, "species_taxid": 2817475, "relation_to_type": "type", "validated": true, "ani": 78.0092, "matched_fragments": 236, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kocuria indica", "strain": "strain=NIO-1021", "accession": "GCA_003667205.1", "taxid": 1049583, "species_taxid": 1049583, "relation_to_type": "type", "validated": true, "ani": 77.9897, "matched_fragments": 210, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sedimenti", "strain": "strain=MIC A30", "accession": "GCA_011750795.2", "taxid": 2694931, "species_taxid": 2694931, "relation_to_type": "type", "validated": true, "ani": 77.9607, "matched_fragments": 268, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rothia kristinae", "strain": "strain=NBRC 15354", "accession": "GCA_001570865.1", "taxid": 37923, "species_taxid": 37923, "relation_to_type": "type", "validated": true, "ani": 77.9326, "matched_fragments": 229, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter crusticola", "strain": "strain=SLN-3", "accession": "GCA_004357995.1", "taxid": 2547960, "species_taxid": 2547960, "relation_to_type": "type", "validated": true, "ani": 77.8483, "matched_fragments": 233, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sunyaminii", "strain": "strain=zg-ZUI122", "accession": "GCA_018866305.1", "taxid": 2816859, "species_taxid": 2816859, "relation_to_type": "type", "validated": true, "ani": 77.8327, "matched_fragments": 206, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sunyaminii", "strain": "strain=zg-ZUI122", "accession": "GCA_017353495.1", "taxid": 2816859, "species_taxid": 2816859, "relation_to_type": "type", "validated": true, "ani": 77.7745, "matched_fragments": 205, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zhihengliuella flava", "strain": "strain=DSM 26152", "accession": "GCA_015751895.1", "taxid": 1285193, "species_taxid": 1285193, "relation_to_type": "type", "validated": true, "ani": 77.6574, "matched_fragments": 238, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas avistercoris", "strain": "strain=Sa3CUA2", "accession": "GCA_014836445.1", "taxid": 2762242, "species_taxid": 2762242, "relation_to_type": "type", "validated": true, "ani": 76.5102, "matched_fragments": 237, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora acidiphila", "strain": "strain=MMS16-CNU292", "accession": "GCA_006636205.1", "taxid": 2567942, "species_taxid": 2567942, "relation_to_type": "type", "validated": true, "ani": 76.1669, "matched_fragments": 261, "total_fragments": 1098, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003575975.1", "gtdb_species": "s__Galactobacter valiniphilus", "ani": 100.0, "matched_fragments": 1095, "total_fragments": 1098, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Galactobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_003640665.1", "gtdb_species": "s__Galactobacter caseinivorans", "ani": 80.4609, "matched_fragments": 507, "total_fragments": 1098, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Galactobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008580665.1", "gtdb_species": "s__Zafaria cholistanensis", "ani": 79.0852, "matched_fragments": 331, "total_fragments": 1098, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Zafaria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000023205.1", "gtdb_species": "s__Micrococcus luteus", "ani": 78.8685, "matched_fragments": 320, "total_fragments": 1098, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Micrococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.15", "min_intra_species_ani": "95.98", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.78", "num_clustered_genomes": 124, "status": "-" }, { 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