{ "type": "genome", "identifier": "GCF_003576315.1", "organism": "Henriciella mobilis", "title": "Henriciella mobilis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Second Institute of Oceanography, State Oceanic Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003576315.1", "bioproject": "PRJNA224116", "biosample": "SAMN09915281", "wgs_master": "QWFZ00000000.1", "refseq_category": "na", "taxid": "2305467", "species_taxid": "2305467", "organism_name": "Henriciella mobilis", "infraspecific_name": "strain=M65", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/19", "asm_name": "ASM357631v1", "asm_submitter": "Second Institute of Oceanography, State Oceanic Administration", "gbrs_paired_asm": "GCA_003576315.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/576/315/GCF_003576315.1_ASM357631v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3973091", "genome_size_ungapped": "3972891", "gc_percent": "61.500000", "replicon_count": "0", "scaffold_count": "39", "contig_count": "39", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-17", "total_gene_count": "3958", "protein_coding_gene_count": "3872", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-19", "dateModified": "2018-09-19", "datePublished": "2018-09-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Henriciella mobilis" ], "sample_taxid": [ "2305467" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean: Western Pacific" ], "sample_host_location_id": [], "data_size": "1.112 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3973091", "Number of Sequences": "39", "Longest Sequences (bp)": "949390", "N50 (bp)": "342652", "Gap Ratio (%)": "0.005034", "GCcontent (%)": "61.3", "Number of CDSs": "3922", "Average Protein Length": "306.3", "Coding Ratio (%)": "90.7", "Number of rRNAs": "3", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Henriciella mobilis", "strain": "strain=M65", "accession": "GCA_003576315.1", "taxid": 2305467, "species_taxid": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Henriciella barbarensis", "strain": "strain=CCUG66934", "accession": "GCA_003576345.1", "taxid": 86342, "species_taxid": 86342, "relation_to_type": "type", "validated": true, "ani": 79.0108, "matched_fragments": 471, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomonas chukchiensis", "strain": "strain=BH-BN04-4", "accession": "GCA_000682695.1", "taxid": 1280947, "species_taxid": 1280947, "relation_to_type": "type", "validated": true, "ani": 78.2393, "matched_fragments": 307, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomonas jannaschiana", "strain": "strain=VP2", "accession": "GCA_000685215.1", "taxid": 86, "species_taxid": 86, "relation_to_type": "type", "validated": true, "ani": 77.9899, "matched_fragments": 304, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { 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