{ "type": "genome", "identifier": "GCF_003579925.1", "organism": "Jiangella rhizosphaerae", "title": "Jiangella rhizosphaerae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "School of life science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003579925.1", "bioproject": "PRJNA224116", "biosample": "SAMN09767656", "wgs_master": "QUAL00000000.1", "refseq_category": "reference genome", "taxid": "2293569", "species_taxid": "2293569", "organism_name": "Jiangella rhizosphaerae", "infraspecific_name": "strain=NEAU-YY265", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/20", "asm_name": "ASM357992v1", "asm_submitter": "School of life science", "gbrs_paired_asm": "GCA_003579925.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/579/925/GCF_003579925.1_ASM357992v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6500878", "genome_size_ungapped": "6500777", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "441", "contig_count": "441", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003579925.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "6317", "protein_coding_gene_count": "6018", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-20", "dateModified": "2018-09-20", "datePublished": "2018-09-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Jiangella rhizosphaerae" ], "sample_taxid": [ "2293569" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Zhumadian" ], "sample_host_location_id": [], "data_size": "1.723 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6500878", "Number of Sequences": "441", "Longest Sequences (bp)": "117633", "N50 (bp)": "28547", "Gap Ratio (%)": "0.002584", "GCcontent (%)": "72.6", "Number of CDSs": "5760", "Average Protein Length": "313.8", "Coding Ratio (%)": "83.4", "Number of rRNAs": "4", "Number of tRNAs": "62", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Jiangella rhizosphaerae", "strain": "strain=NEAU-YY265", "accession": "GCA_003579925.1", "taxid": 2293569, "species_taxid": 2293569, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1942, "total_fragments": 1956, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Jiangella aurantiaca", "strain": "strain=8K307", "accession": "GCA_004349105.1", "taxid": 2530373, "species_taxid": 2530373, "relation_to_type": "type", "validated": true, "ani": 91.3117, "matched_fragments": 1479, "total_fragments": 1956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella alkaliphila", "strain": "strain=KCTC 19222", "accession": "GCA_001005145.1", "taxid": 419479, "species_taxid": 419479, "relation_to_type": "type", "validated": true, "ani": 89.5021, "matched_fragments": 1506, "total_fragments": 1956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella alkaliphila", "strain": "strain=DSM 45079", "accession": "GCA_900105925.1", "taxid": 419479, "species_taxid": 419479, "relation_to_type": "type", "validated": true, "ani": 89.4893, "matched_fragments": 1546, "total_fragments": 1956, "ani_threshold": 95, "status": "below_threshold" }, { 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"accession": "GCA_001270745.1", "taxid": 702383, "species_taxid": 702383, "relation_to_type": "type", "validated": true, "ani": 88.915, "matched_fragments": 1464, "total_fragments": 1956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella anatolica", "strain": "strain=GTF31", "accession": "GCA_003236295.1", "taxid": 2670374, "species_taxid": 2670374, "relation_to_type": "type", "validated": true, "ani": 88.5778, "matched_fragments": 1453, "total_fragments": 1956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella mangrovi", "strain": "strain=DSM 102122", "accession": "GCA_014204975.1", "taxid": 1524084, "species_taxid": 1524084, "relation_to_type": "type", "validated": true, "ani": 87.9947, "matched_fragments": 1555, "total_fragments": 1956, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura rupiterrae", "strain": "strain=DSM 45251", "accession": "GCA_024172125.1", "taxid": 559627, 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