{ "type": "genome", "identifier": "GCF_003581425.1", "organism": "Amnibacterium setariae", "title": "Amnibacterium setariae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Dongguk university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003581425.1", "bioproject": "PRJNA224116", "biosample": "SAMN09930308", "wgs_master": "QXTG00000000.1", "refseq_category": "reference genome", "taxid": "2306585", "species_taxid": "2306585", "organism_name": "Amnibacterium setariae", "infraspecific_name": "strain=DD4a", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/20", "asm_name": "ASM358142v1", "asm_submitter": "Dongguk university", "gbrs_paired_asm": "GCA_003581425.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/581/425/GCF_003581425.1_ASM358142v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3482706", "genome_size_ungapped": "3482706", "gc_percent": "74.000000", "replicon_count": "0", "scaffold_count": "5", "contig_count": "5", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003581425.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3502", "protein_coding_gene_count": "3436", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-20", "dateModified": "2018-09-20", "datePublished": "2018-09-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Amnibacterium setariae" ], "sample_taxid": [ "2306585" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Goyang" ], "sample_host_location_id": [], "data_size": "0.900 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3482706", "Number of Sequences": "5", "Longest Sequences (bp)": "1570942", "N50 (bp)": "1549559", "Gap Ratio (%)": "0.000029", "GCcontent (%)": "73.9", "Number of CDSs": "3475", "Average Protein Length": "306.8", "Coding Ratio (%)": "91.8", "Number of rRNAs": "2", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Amnibacterium setariae", "strain": "strain=DD4a", "accession": "GCA_003581425.1", "taxid": 2306585, "species_taxid": 2306585, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1158, "total_fragments": 1158, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Amnibacterium kyonggiense", "strain": "strain=DSM 24782", "accession": "GCA_004364555.1", "taxid": 595671, "species_taxid": 595671, "relation_to_type": "type", "validated": true, "ani": 85.3845, "matched_fragments": 865, "total_fragments": 1158, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rathayibacter festucae", "strain": "strain=DSM 15932", "accession": "GCA_004011135.1", "taxid": 110937, "species_taxid": 110937, "relation_to_type": "type", "validated": true, "ani": 78.7068, "matched_fragments": 522, "total_fragments": 1158, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gryllotalpicola ginsengisoli", "strain": "strain=DSM 22003", "accession": "GCA_000419445.1", "taxid": 444608, "species_taxid": 444608, "relation_to_type": "type", "validated": true, "ani": 78.6632, "matched_fragments": 403, "total_fragments": 1158, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Protaetiibacter intestinalis", "strain": "strain=2DFWR-13", "accession": "GCA_003627075.1", "taxid": 2419774, "species_taxid": 2419774, "relation_to_type": "type", "validated": true, "ani": 78.5713, "matched_fragments": 448, "total_fragments": 1158, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces mariniharenae", "strain": "strain=NEAU-184", "accession": "GCA_008122505.1", "taxid": 2604423, "species_taxid": 2604423, "relation_to_type": "type", "validated": true, "ani": 78.3464, "matched_fragments": 485, "total_fragments": 1158, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rathayibacter caricis", "strain": "strain=DSM 15933", "accession": "GCA_003044275.1", "taxid": 110936, "species_taxid": 110936, "relation_to_type": "type", "validated": true, "ani": 78.3393, "matched_fragments": 499, "total_fragments": 1158, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces terreus", "strain": "strain=JCM 14581", "accession": "GCA_009749465.1", "taxid": 424795, "species_taxid": 424795, "relation_to_type": "type", "validated": true, "ani": 78.3267, "matched_fragments": 447, "total_fragments": 1158, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces aurantiacus", "strain": "strain=DSM 14598", "accession": "GCA_016907355.1", "taxid": 165814, "species_taxid": 165814, "relation_to_type": "type", "validated": true, "ani": 78.2926, "matched_fragments": 490, "total_fragments": 1158, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces cerinus subsp. cerinus", "strain": "strain=DSM 8595", "accession": "GCA_900142065.1", "taxid": 232089, "species_taxid": 33878, "relation_to_type": "type", "validated": true, "ani": 78.16, "matched_fragments": 447, "total_fragments": 1158, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces allii", "strain": "strain=JCM 13584", "accession": "GCA_009749385.1", "taxid": 393607, "species_taxid": 393607, "relation_to_type": "type", "validated": true, "ani": 78.1561, "matched_fragments": 473, "total_fragments": 1158, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces archimandritae", "strain": "strain=G127AT", "accession": "GCA_018024495.1", "taxid": 2781962, "species_taxid": 2781962, "relation_to_type": "type", "validated": true, "ani": 78.1241, "matched_fragments": 412, "total_fragments": 1158, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curtobacterium citreum", "strain": "strain=LMG8786T", "accession": "GCA_024997915.1", "taxid": 2036, "species_taxid": 2036, "relation_to_type": "type", "validated": true, "ani": 78.1234, "matched_fragments": 470, "total_fragments": 1158, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curtobacterium citreum", "strain": "strain=JCM 1345", "accession": "GCA_014646735.1", "taxid": 2036, "species_taxid": 2036, "relation_to_type": "type", "validated": true, "ani": 78.0993, "matched_fragments": 470, "total_fragments": 1158, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrococcus sediminis", "strain": "strain=NS18", "accession": "GCA_007923295.1", "taxid": 2599924, "species_taxid": 2599924, "relation_to_type": "type", "validated": true, "ani": 78.0969, "matched_fragments": 438, "total_fragments": 1158, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrococcus jenensis", "strain": "strain=DSM 9580", "accession": "GCA_003752465.1", "taxid": 46353, "species_taxid": 46353, "relation_to_type": "type", "validated": true, "ani": 78.0614, "matched_fragments": 458, "total_fragments": 1158, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces cavernae", "strain": "strain=SYSU K20354", "accession": "GCA_021044935.1", "taxid": 2898659, "species_taxid": 2898659, "relation_to_type": "type", "validated": true, "ani": 78.0304, "matched_fragments": 427, "total_fragments": 1158, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium lemovicicum", "strain": "strain=Viu22", "accession": "GCA_003991875.1", "taxid": 1072463, "species_taxid": 1072463, "relation_to_type": "type", "validated": true, "ani": 77.9881, "matched_fragments": 393, "total_fragments": 1158, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium gallinarum", "strain": "strain=Sa1CUA4", "accession": "GCA_014837165.1", "taxid": 2762209, "species_taxid": 2762209, "relation_to_type": "type", "validated": true, "ani": 77.9068, "matched_fragments": 361, "total_fragments": 1158, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces humatus", "strain": "strain=JCM 14319", "accession": "GCA_021228295.1", "taxid": 279573, "species_taxid": 279573, "relation_to_type": "type", "validated": true, "ani": 77.8908, "matched_fragments": 405, "total_fragments": 1158, "ani_threshold": 95, "status": 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ulmi", "strain": "strain=JCM 14282", "accession": "GCA_013004565.1", "taxid": 179095, "species_taxid": 179095, "relation_to_type": "type", "validated": true, "ani": 77.5241, "matched_fragments": 377, "total_fragments": 1158, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003581425.1", "gtdb_species": "s__Amnibacterium setariae", "ani": 100.0, "matched_fragments": 1158, "total_fragments": 1158, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Amnibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_004364555.1", "gtdb_species": "s__Amnibacterium kyonggiense", "ani": 85.3513, "matched_fragments": 867, 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