{ "type": "genome", "identifier": "GCF_003583765.1", "organism": "Paenibacillus nanensis", "title": "Paenibacillus nanensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "IRNAS-CSIC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003583765.1", "bioproject": "PRJNA224116", "biosample": "SAMN09989116", "wgs_master": "QXQA00000000.1", "refseq_category": "reference genome", "taxid": "393251", "species_taxid": "393251", "organism_name": "Paenibacillus nanensis", "infraspecific_name": "strain=DSM 22867", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/20", "asm_name": "ASM358376v1", "asm_submitter": "IRNAS-CSIC", "gbrs_paired_asm": "GCA_003583765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/583/765/GCF_003583765.1_ASM358376v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6118890", "genome_size_ungapped": "6118890", "gc_percent": "52.500000", "replicon_count": "0", "scaffold_count": "45", "contig_count": "45", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003583765.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "5401", "protein_coding_gene_count": "5276", "non_coding_gene_count": "100", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-20", "dateModified": "2018-09-20", "datePublished": "2018-09-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus nanensis" ], "sample_taxid": [ "393251" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand" ], "sample_host_location_id": [], "data_size": "1.734 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6118890", "Number of Sequences": "45", "Longest Sequences (bp)": "772839", "N50 (bp)": "267651", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.6", "Number of CDSs": "5396", "Average Protein Length": "335.7", "Coding Ratio (%)": "88.8", "Number of rRNAs": "5", "Number of tRNAs": "67", "Number of CRISPRs": "8" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus nanensis", "strain": "strain=DSM 22867", "accession": "GCA_003583765.1", "taxid": 393251, "species_taxid": 393251, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2013, "total_fragments": 2017, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paenibacillus pinisoli", "strain": "strain=JCM 19203", "accession": "GCA_003605435.1", "taxid": 1276110, "species_taxid": 1276110, "relation_to_type": "type", "validated": true, "ani": 79.7049, "matched_fragments": 587, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus paeoniae", "strain": "strain=M4BSY-1", "accession": "GCA_003388735.1", "taxid": 2292705, "species_taxid": 2292705, "relation_to_type": "type", "validated": true, "ani": 79.4782, "matched_fragments": 498, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus harenae", "strain": "strain=DSM 16969", "accession": "GCA_000422465.1", "taxid": 306543, "species_taxid": 306543, "relation_to_type": "type", "validated": true, "ani": 78.5571, "matched_fragments": 429, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus oryzae", "strain": "strain=1DrF-4", "accession": "GCA_001675045.1", "taxid": 1844972, "species_taxid": 1844972, "relation_to_type": "type", "validated": true, "ani": 78.0438, "matched_fragments": 336, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus glycanilyticus", "strain": "strain=NBRC 16618", "accession": "GCA_004000805.1", "taxid": 126569, "species_taxid": 126569, "relation_to_type": "type", "validated": true, "ani": 77.9973, "matched_fragments": 331, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus glycanilyticus subsp. hiroshimensis", "strain": "strain=CCI5", "accession": "GCA_015473105.1", "taxid": 2805378, "species_taxid": 126569, "relation_to_type": "type", "validated": true, "ani": 77.9629, "matched_fragments": 367, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus protaetiae", "strain": "strain=FW100M-2", "accession": "GCA_004135365.1", "taxid": 2509456, "species_taxid": 2509456, "relation_to_type": "type", "validated": true, "ani": 77.6624, "matched_fragments": 269, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus endophyticus", "strain": "strain=CECT 8234", "accession": "GCA_014192395.1", "taxid": 1294268, "species_taxid": 1294268, "relation_to_type": "type", "validated": true, "ani": 77.6141, "matched_fragments": 315, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus lycopersici", "strain": "strain=12200R-189", "accession": "GCA_010119935.1", "taxid": 2704462, "species_taxid": 2704462, "relation_to_type": "type", "validated": true, "ani": 77.3182, "matched_fragments": 305, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus artemisiicola", "strain": "strain=MWE-103", "accession": "GCA_017652985.1", "taxid": 1172618, "species_taxid": 1172618, "relation_to_type": "type", "validated": true, "ani": 77.3122, "matched_fragments": 291, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus taihuensis", "strain": "strain=CGMCC 1.10966", "accession": "GCA_003386535.1", "taxid": 1156355, "species_taxid": 1156355, "relation_to_type": "type", "validated": true, "ani": 77.2616, "matched_fragments": 222, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus glycinis", "strain": "strain=T1", "accession": "GCA_009909185.1", "taxid": 2697035, "species_taxid": 2697035, "relation_to_type": "type", "validated": true, "ani": 77.2293, "matched_fragments": 296, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus macerans", "strain": "strain=ATCC 8244", "accession": "GCA_000746875.1", "taxid": 44252, "species_taxid": 44252, 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true, "ani": 77.0553, "matched_fragments": 258, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus albicereus", "strain": "strain=UniB2", "accession": "GCA_012676905.1", "taxid": 2726185, "species_taxid": 2726185, "relation_to_type": "type", "validated": true, "ani": 76.979, "matched_fragments": 218, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus timonensis", "strain": "strain=DSM 16943", "accession": "GCA_022427145.1", "taxid": 225915, "species_taxid": 225915, "relation_to_type": "type", "validated": true, "ani": 76.6581, "matched_fragments": 158, "total_fragments": 2017, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus caui", "strain": "strain=81-11", "accession": "GCA_019904135.1", "taxid": 2873927, "species_taxid": 2873927, "relation_to_type": "type", "validated": true, "ani": 76.5813, "matched_fragments": 102, 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