{ "type": "genome", "identifier": "GCF_003583985.1", "organism": "Algoriphagus lacus", "title": "Algoriphagus lacus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003583985.1", "bioproject": "PRJNA224116", "biosample": "SAMN09858241", "wgs_master": "QXML00000000.1", "refseq_category": "reference genome", "taxid": "2056311", "species_taxid": "2056311", "organism_name": "Algoriphagus lacus", "infraspecific_name": "strain=N3", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/20", "asm_name": "ASM358398v1", "asm_submitter": "Shandong University", "gbrs_paired_asm": "GCA_003583985.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/583/985/GCF_003583985.1_ASM358398v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4701328", "genome_size_ungapped": "4701218", "gc_percent": "44.000000", "replicon_count": "0", "scaffold_count": "43", "contig_count": "43", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003583985.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4010", "protein_coding_gene_count": "3947", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-20", "dateModified": "2018-09-20", "datePublished": "2018-09-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Algoriphagus lacus" ], "sample_taxid": [ "2056311" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Yun nan, Fu xian hu" ], "sample_host_location_id": [], "data_size": "1.333 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4701328", "Number of Sequences": "43", "Longest Sequences (bp)": "955800", "N50 (bp)": "419902", "Gap Ratio (%)": "0.002467", "GCcontent (%)": "43.9", "Number of CDSs": "3898", "Average Protein Length": "357.0", "Coding Ratio (%)": "88.8", "Number of rRNAs": "3", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Algoriphagus lacus", "strain": "strain=N3", "accession": "GCA_003583985.1", "taxid": 2056311, "species_taxid": 2056311, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1547, "total_fragments": 1547, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Algoriphagus aquaeductus", "strain": "strain=T4", "accession": "GCA_003253485.1", "taxid": 475299, "species_taxid": 475299, "relation_to_type": "type", "validated": true, "ani": 78.6562, "matched_fragments": 545, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus litoralis", "strain": "strain=DSL-12", "accession": "GCA_003259255.1", "taxid": 2202829, "species_taxid": 2202829, "relation_to_type": "type", "validated": true, "ani": 78.4575, "matched_fragments": 517, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus boritolerans", "strain": "strain=DSM 17298", "accession": "GCA_900108085.1", "taxid": 308111, "species_taxid": 308111, "relation_to_type": "type", "validated": true, "ani": 78.386, "matched_fragments": 517, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus terrigena", "strain": "strain=DSM 22685", "accession": "GCA_000429445.1", "taxid": 344884, "species_taxid": 344884, "relation_to_type": "type", "validated": true, "ani": 78.3234, "matched_fragments": 487, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus aestuariicola", "strain": "strain=JCM 31546", "accession": "GCA_017254835.1", "taxid": 1852016, "species_taxid": 1852016, "relation_to_type": "type", "validated": true, "ani": 78.2631, "matched_fragments": 412, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus alkaliphilus", "strain": "strain=DSM 22703", "accession": "GCA_900103735.1", "taxid": 279824, "species_taxid": 279824, "relation_to_type": "type", "validated": true, "ani": 78.2524, "matched_fragments": 561, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus sanaruensis", "strain": "strain=M8-2", "accession": "GCA_001593605.1", "taxid": 1727163, "species_taxid": 1727163, "relation_to_type": "type", "validated": true, "ani": 78.128, "matched_fragments": 358, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus mannitolivorans", "strain": "strain=DSM 15301", "accession": "GCA_000429425.1", "taxid": 226504, "species_taxid": 226504, "relation_to_type": "type", "validated": true, "ani": 78.0957, "matched_fragments": 417, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus boseongensis", "strain": "strain=CECT 8446", "accession": "GCA_004362805.1", "taxid": 1442587, "species_taxid": 1442587, "relation_to_type": "type", "validated": true, "ani": 77.9682, "matched_fragments": 451, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus hitonicola", "strain": "strain=DSM 19315", "accession": "GCA_900113375.1", "taxid": 435880, "species_taxid": 435880, "relation_to_type": "type", "validated": true, "ani": 77.3497, "matched_fragments": 242, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus machipongonensis", "strain": "strain=PR1", "accession": "GCA_000166275.1", "taxid": 388413, "species_taxid": 388413, "relation_to_type": "type", "validated": true, "ani": 77.2602, "matched_fragments": 162, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus yeomjeoni", "strain": "strain=DSM 23446", "accession": "GCA_003259505.1", "taxid": 291403, "species_taxid": 291403, "relation_to_type": "type", "validated": true, "ani": 77.0836, "matched_fragments": 195, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003583985.1", "gtdb_species": 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