{ "type": "genome", "identifier": "GCF_003584165.1", "organism": "Flagellimonas aequoris", "title": "Flagellimonas aequoris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Second Institute of Oceanography, State Oceanic Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003584165.1", "bioproject": "PRJNA224116", "biosample": "SAMN09939640", "wgs_master": "QXFJ00000000.1", "refseq_category": "reference genome", "taxid": "2306997", "species_taxid": "2306997", "organism_name": "Flagellimonas aequoris", "infraspecific_name": "strain=NH166", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/20", "asm_name": "ASM358416v1", "asm_submitter": "Second Institute of Oceanography, State Oceanic Administration", "gbrs_paired_asm": "GCA_003584165.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/584/165/GCF_003584165.1_ASM358416v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4238297", "genome_size_ungapped": "4238078", "gc_percent": "43.500000", "replicon_count": "0", "scaffold_count": "31", "contig_count": "31", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-03", "total_gene_count": "3858", "protein_coding_gene_count": "3782", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-20", "dateModified": "2018-09-20", "datePublished": "2018-09-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Flagellimonas aequoris" ], "sample_taxid": [ "2306997" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: South China Sea" ], "sample_host_location_id": [], "data_size": "1.201 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4238297", "Number of Sequences": "31", "Longest Sequences (bp)": "910221", "N50 (bp)": "336725", "Gap Ratio (%)": "0.005309", "GCcontent (%)": "43.4", "Number of CDSs": "3756", "Average Protein Length": "339.6", "Coding Ratio (%)": "90.3", "Number of rRNAs": "12", "Number of tRNAs": "42", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Muricauda aequoris", "strain": "strain=NH166", "accession": "GCA_008017345.1", "taxid": 2306997, "species_taxid": 2306997, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1395, "total_fragments": 1398, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Muricauda aequoris", "strain": "strain=NH166", "accession": "GCA_003584165.1", "taxid": 2306997, "species_taxid": 2306997, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1395, "total_fragments": 1398, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Muricauda maritima", "strain": "strain=72", "accession": "GCA_008017365.1", "taxid": 2306998, "species_taxid": 2306998, "relation_to_type": "type", "validated": true, "ani": 94.229, "matched_fragments": 1120, "total_fragments": 1398, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda maritima", "strain": "strain=72", "accession": "GCA_003584135.1", "taxid": 2306998, "species_taxid": 2306998, "relation_to_type": "type", "validated": true, "ani": 94.2275, "matched_fragments": 1120, "total_fragments": 1398, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda sediminis", "strain": "strain=40Bstr401", "accession": "GCA_010500845.1", "taxid": 2696468, "species_taxid": 2696468, "relation_to_type": "type", "validated": true, "ani": 86.7397, "matched_fragments": 1022, "total_fragments": 1398, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda amoyensis", "strain": "strain=GCL-11", "accession": "GCA_003058265.1", "taxid": 2169401, "species_taxid": 2169401, "relation_to_type": "type", "validated": true, "ani": 81.0905, "matched_fragments": 668, "total_fragments": 1398, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda hadalis", "strain": "strain=MT-229", "accession": "GCA_007785775.2", "taxid": 2597517, "species_taxid": 2597517, "relation_to_type": "type", "validated": true, "ani": 80.7372, "matched_fragments": 686, "total_fragments": 1398, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda profundi", "strain": "strain=BC31-3-A3", "accession": "GCA_017313275.1", "taxid": 2915620, "species_taxid": 2915620, "relation_to_type": "type", "validated": true, "ani": 79.4618, "matched_fragments": 543, "total_fragments": 1398, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda onchidii", "strain": "strain=XY-359", "accession": "GCA_004804315.1", "taxid": 2562684, "species_taxid": 2562684, "relation_to_type": "type", "validated": true, "ani": 77.5409, "matched_fragments": 260, "total_fragments": 1398, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003584165.1", "gtdb_species": "s__Muricauda sp003584165", "ani": 100.0, "matched_fragments": 1395, "total_fragments": 1398, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_003584135.1", "gtdb_species": "s__Muricauda sp003584135", "ani": 94.2232, "matched_fragments": 1119, "total_fragments": 1398, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_010500845.1", "gtdb_species": "s__Muricauda sediminis", "ani": 86.7365, "matched_fragments": 1022, "total_fragments": 1398, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003584105.1", "gtdb_species": "s__Muricauda taeanensis", "ani": 81.37, "matched_fragments": 667, "total_fragments": 1398, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.68", "min_intra_species_ani": "97.68", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003058265.1", "gtdb_species": "s__Muricauda sp003058265", "ani": 81.1001, "matched_fragments": 667, "total_fragments": 1398, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007785775.2", "gtdb_species": "s__Muricauda sp003973595", "ani": 80.7272, "matched_fragments": 686, "total_fragments": 1398, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.36", "min_intra_species_ani": "98.36", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003992615.1", "gtdb_species": "s__Muricauda beolgyonensis", "ani": 80.287, "matched_fragments": 677, "total_fragments": 1398, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003385855.1", "gtdb_species": "s__Muricauda sp003385855", "ani": 79.1857, "matched_fragments": 517, "total_fragments": 1398, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.98", "min_intra_species_ani": "97.98", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009184425.1", "gtdb_species": "s__Muricauda olearia", "ani": 78.9792, "matched_fragments": 515, "total_fragments": 1398, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.52", "min_intra_species_ani": "96.52", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_010468565.1", "gtdb_species": "s__Muricauda sp010468565", "ani": 78.9781, "matched_fragments": 531, "total_fragments": 1398, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017313105.1", "gtdb_species": "s__Muricauda sp017313105", "ani": 78.6019, "matched_fragments": 532, "total_fragments": 1398, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.553, "cell_length": 0.23, "doubling_h": null, "growth_tmp": null, "optimum_tmp": 27.5, "optimum_ph": 8.0, "genome_size": 4132279.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flagellimonas", "aequoris" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }