{ "type": "genome", "identifier": "GCF_003584645.1", "organism": "Methylocaldum marinum", "title": "Methylocaldum marinum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Advanced Industrial Science and Technology, Japan", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003584645.1", "bioproject": "PRJNA224116", "biosample": "SAMD00066775", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1432792", "species_taxid": "1432792", "organism_name": "Methylocaldum marinum", "infraspecific_name": "strain=S8", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/09/08", "asm_name": "ASM358464v1", "asm_submitter": "National Institute of Advanced Industrial Science and Technology, Japan", "gbrs_paired_asm": "GCA_003584645.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/584/645/GCF_003584645.1_ASM358464v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6088916", "genome_size_ungapped": "6088916", "gc_percent": "58.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003584645.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "5524", "protein_coding_gene_count": "5365", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-09-08", "dateModified": "2017-09-08", "datePublished": "2017-09-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Methylocaldum marinum" ], "sample_taxid": [ "1432792" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan: Kagoshima, Kagoshima Bay" ], "sample_host_location_id": [], "data_size": "1.704 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.58, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6088916", "Number of Sequences": "1", "Longest Sequences (bp)": "6088916", "N50 (bp)": "6088916", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.7", "Number of CDSs": "5603", "Average Protein Length": "308.0", "Coding Ratio (%)": "85.0", "Number of rRNAs": "6", "Number of tRNAs": "50", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methylocaldum marinum", "strain": "strain=S8", "accession": "GCA_003584645.1", "taxid": 1432792, "species_taxid": 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"status": "below_threshold" }, { "organism_name": "Allochromatium tepidum", "strain": "strain=NZ", "accession": "GCA_018409545.1", "taxid": 553982, "species_taxid": 553982, "relation_to_type": "type", "validated": true, "ani": 76.8473, "matched_fragments": 78, "total_fragments": 2029, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylotetracoccus oryzae", "strain": "strain=C50C1", "accession": "GCA_006175985.1", "taxid": 1919059, "species_taxid": 1919059, "relation_to_type": "type", "validated": true, "ani": 76.6859, "matched_fragments": 129, "total_fragments": 2029, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuriferula plumbiphila", "strain": "strain=Gro7", "accession": "GCA_009938015.1", "taxid": 171865, "species_taxid": 171865, "relation_to_type": "type", "validated": true, "ani": 76.6495, "matched_fragments": 51, "total_fragments": 2029, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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