{ "type": "genome", "identifier": "GCF_003585765.1", "organism": "Pontibacter actiniarum", "title": "Pontibacter actiniarum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Lawrence Berkeley National Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003585765.1", "bioproject": "PRJNA224116", "biosample": "SAMN06924458", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "323450", "species_taxid": "323450", "organism_name": "Pontibacter actiniarum", "infraspecific_name": "strain=DSM 19842", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/05/19", "asm_name": "ASM358576v1", "asm_submitter": "Lawrence Berkeley National Laboratory", "gbrs_paired_asm": "GCA_003585765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/585/765/GCF_003585765.1_ASM358576v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4974797", "genome_size_ungapped": "4974797", "gc_percent": "53.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-05", "total_gene_count": "4350", "protein_coding_gene_count": "4267", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-05-19", "dateModified": "2017-05-19", "datePublished": "2017-05-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Pontibacter actiniarum DSM 19842" ], "sample_taxid": [ "709015" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia: Pacific Ocean, Rudnaya Bay" ], "sample_host_location_id": [], "data_size": "1.413 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.31, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4974797", "Number of Sequences": "2", "Longest Sequences (bp)": "4770770", "N50 (bp)": "4770770", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.2", "Number of CDSs": "4273", "Average Protein Length": "329.2", "Coding Ratio (%)": "84.8", "Number of rRNAs": "15", "Number of tRNAs": "51", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pontibacter actiniarum", "strain": "strain=DSM 19842", "accession": "GCA_003585765.1", "taxid": 323450, "species_taxid": 323450, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1656, "total_fragments": 1658, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pontibacter actiniarum", "strain": "strain=DSM 19842", "accession": "GCA_000472485.1", "taxid": 323450, "species_taxid": 323450, "relation_to_type": "type", "validated": true, "ani": 99.9926, "matched_fragments": 1637, "total_fragments": 1658, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pontibacter mangrovi", "strain": "strain=HB172049", "accession": "GCA_006385705.1", "taxid": 2589816, "species_taxid": 2589816, "relation_to_type": "type", "validated": true, "ani": 81.6211, "matched_fragments": 886, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter flavimaris", "strain": "strain=S10-8", "accession": "GCA_001907195.1", "taxid": 1797110, "species_taxid": 1797110, "relation_to_type": "type", "validated": true, "ani": 80.9113, "matched_fragments": 880, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter oryzae", "strain": "strain=KIRAN", "accession": "GCA_003576375.1", "taxid": 2304593, "species_taxid": 2304593, "relation_to_type": "type", "validated": true, "ani": 80.7265, "matched_fragments": 743, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter mucosus", "strain": "strain=DSM 100162", "accession": "GCA_003054055.1", "taxid": 1649266, "species_taxid": 1649266, "relation_to_type": "type", "validated": true, "ani": 80.579, "matched_fragments": 862, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter chinhatensis", "strain": "strain=LP51", "accession": "GCA_900113285.1", "taxid": 1436961, "species_taxid": 1436961, "relation_to_type": "type", "validated": true, "ani": 80.0702, "matched_fragments": 843, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter ruber", "strain": "strain=JC213", "accession": "GCA_023630205.1", "taxid": 1343895, "species_taxid": 1343895, "relation_to_type": "type", "validated": true, "ani": 78.7937, "matched_fragments": 542, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter pamirensis", "strain": "strain=TRT317", "accession": "GCA_010015475.1", "taxid": 2562824, "species_taxid": 2562824, "relation_to_type": "type", "validated": true, "ani": 78.5019, "matched_fragments": 533, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter aquaedesilientis", "strain": "strain=JH31", "accession": "GCA_014773225.1", "taxid": 2766980, "species_taxid": 2766980, "relation_to_type": "type", "validated": true, "ani": 78.087, "matched_fragments": 415, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter deserti", "strain": "strain=JC215", "accession": "GCA_023630255.1", "taxid": 1343896, "species_taxid": 1343896, "relation_to_type": "type", "validated": true, "ani": 77.9447, "matched_fragments": 346, "total_fragments": 1658, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.31, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003585765.1", "gtdb_species": "s__Pontibacter actiniarum", "ani": 100.0, "matched_fragments": 1655, "total_fragments": 1658, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Pontibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_006385705.1", "gtdb_species": "s__Pontibacter sp006385705", "ani": 81.6083, "matched_fragments": 888, "total_fragments": 1658, 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Pontibacter", "actiniarum" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }