{ "type": "genome", "identifier": "GCF_003591175.1", "organism": "Serratia inhibens", "title": "Serratia inhibens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Copenhagen", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003591175.1", "bioproject": "PRJNA224116", "biosample": "SAMN10068376", "wgs_master": "QYYG00000000.1", "refseq_category": "reference genome", "taxid": "2338073", "species_taxid": "2338073", "organism_name": "Serratia inhibens", "infraspecific_name": "strain=S40", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/24", "asm_name": "ASM359117v1", "asm_submitter": "University of Copenhagen", "gbrs_paired_asm": "GCA_003591175.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/591/175/GCF_003591175.1_ASM359117v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5383735", "genome_size_ungapped": "5383302", "gc_percent": "56.000000", "replicon_count": "0", "scaffold_count": "29", "contig_count": "29", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003591175.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "5038", "protein_coding_gene_count": "4855", "non_coding_gene_count": "107", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-24", "dateModified": "2018-09-24", "datePublished": "2018-09-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Serratia inhibens" ], "sample_taxid": [ "2338073" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Denmark: Zealand" ], "sample_host_location_id": [], "data_size": "1.520 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5383735", "Number of Sequences": "29", "Longest Sequences (bp)": "1889945", "N50 (bp)": "362774", "Gap Ratio (%)": "0.008043", "GCcontent (%)": "55.9", "Number of CDSs": "4924", "Average Protein Length": "316.7", "Coding Ratio (%)": "86.9", "Number of rRNAs": "4", "Number of tRNAs": "83", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Serratia inhibens", "strain": "strain=S40", "accession": "GCA_003591175.1", "taxid": 2338073, "species_taxid": 2338073, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1780, "total_fragments": 1781, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Serratia plymuthica", "strain": "strain=NBRC 102599", "accession": "GCA_001590925.1", "taxid": 82996, "species_taxid": 82996, "relation_to_type": "type", "validated": true, "ani": 94.0671, "matched_fragments": 1509, "total_fragments": 1781, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia plymuthica", "strain": "strain=FDAARGOS_895", "accession": "GCA_016027675.1", "taxid": 82996, "species_taxid": 82996, "relation_to_type": "type", "validated": true, "ani": 94.065, "matched_fragments": 1542, "total_fragments": 1781, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia proteamaculans", "strain": "strain=CCUG 14510", "accession": "GCA_008830365.1", "taxid": 28151, "species_taxid": 28151, "relation_to_type": "type", "validated": true, "ani": 87.2707, "matched_fragments": 1372, "total_fragments": 1781, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia quinivorans", "strain": "strain=NCTC11544", "accession": "GCA_900457075.1", "taxid": 137545, "species_taxid": 137545, "relation_to_type": "suspected-type", "validated": true, "ani": 87.2077, "matched_fragments": 1372, "total_fragments": 1781, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia liquefaciens", "strain": "strain=ATCC 27592", "accession": "GCA_000422085.1", "taxid": 614, "species_taxid": 614, "relation_to_type": "type", "validated": true, "ani": 86.9376, "matched_fragments": 1342, "total_fragments": 1781, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia ficaria", "strain": "strain=NBRC 102596", "accession": "GCA_001590885.1", "taxid": 61651, "species_taxid": 61651, "relation_to_type": "type", "validated": true, "ani": 86.5595, "matched_fragments": 1297, "total_fragments": 1781, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia entomophila", "strain": "strain=A1", "accession": "GCA_021462285.1", "taxid": 42906, "species_taxid": 42906, "relation_to_type": "type", "validated": true, "ani": 86.3416, "matched_fragments": 1262, "total_fragments": 1781, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia grimesii", "strain": "strain=NCTC11543", "accession": "GCA_900456935.1", "taxid": 82995, "species_taxid": 82995, "relation_to_type": "type", "validated": true, "ani": 85.555, "matched_fragments": 1308, "total_fragments": 1781, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia nevei", "strain": "strain=S15", "accession": "GCA_008364245.1", "taxid": 2703794, "species_taxid": 2703794, "relation_to_type": "type", "validated": true, "ani": 85.254, "matched_fragments": 1199, "total_fragments": 1781, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia bockelmannii", "strain": "strain=S3", "accession": "GCA_008011855.1", "taxid": 2703793, "species_taxid": 2703793, "relation_to_type": "type", "validated": true, "ani": 85.0807, "matched_fragments": 1178, "total_fragments": 1781, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rahnella rivi", "strain": "strain=FC061912-K", "accession": "GCA_019049655.1", "taxid": 2816249, "species_taxid": 2816249, "relation_to_type": "type", "validated": true, "ani": 79.3249, "matched_fragments": 645, "total_fragments": 1781, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erwinia aphidicola", "strain": "strain=X001", "accession": "GCA_024169515.1", "taxid": 68334, "species_taxid": 68334, "relation_to_type": "type", "validated": true, "ani": 79.046, "matched_fragments": 600, "total_fragments": 1781, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003591175.1", "gtdb_species": "s__Serratia inhibens", "ani": 100.0, "matched_fragments": 1780, "total_fragments": 1781, 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.90", "min_intra_species_ani": "96.52", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.88", "num_clustered_genomes": 29, "status": "-" }, { "accession": "GCF_008830365.1", "gtdb_species": "s__Serratia proteamaculans", "ani": 87.2762, "matched_fragments": 1371, "total_fragments": 1781, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Serratia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.96", "min_intra_species_ani": "95.51", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.86", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCF_900457075.1", "gtdb_species": "s__Serratia quinivorans", "ani": 87.1985, "matched_fragments": 1373, "total_fragments": 1781, "gtdb_taxonomy": 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