{ "type": "genome", "identifier": "GCF_003591515.1", "organism": "Paracoccus onubensis", "title": "Paracoccus onubensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "IRNAS-CSIC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003591515.1", "bioproject": "PRJNA224116", "biosample": "SAMN09989029", "wgs_master": "QZCG00000000.1", "refseq_category": "reference genome", "taxid": "1675788", "species_taxid": "1675788", "organism_name": "Paracoccus onubensis", "infraspecific_name": "strain=1011MAR3C25", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/24", "asm_name": "ASM359151v1", "asm_submitter": "IRNAS-CSIC", "gbrs_paired_asm": "GCA_003591515.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/591/515/GCF_003591515.1_ASM359151v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4764139", "genome_size_ungapped": "4764139", "gc_percent": "60.500000", "replicon_count": "0", "scaffold_count": "40", "contig_count": "40", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003591515.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "4612", "protein_coding_gene_count": "4513", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-24", "dateModified": "2018-09-24", "datePublished": "2018-09-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Paracoccus onubensis" ], "sample_taxid": [ "1675788" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain: Aracena, Gruta de las Maravillas" ], "sample_host_location_id": [], "data_size": "1.332 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4764139", "Number of Sequences": "40", "Longest Sequences (bp)": "518150", "N50 (bp)": "272503", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.3", "Number of CDSs": "4578", "Average Protein Length": "309.3", "Coding Ratio (%)": "89.2", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paracoccus onubensis", "strain": "strain=1011MAR3C25", "accession": "GCA_003591515.1", "taxid": 1675788, "species_taxid": 1675788, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1564, "total_fragments": 1567, "ani_threshold": 95, 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"GCA_004335005.1", "taxid": 2489002, "species_taxid": 2489002, "relation_to_type": "type", "validated": true, "ani": 78.9079, "matched_fragments": 502, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus seriniphilus", "strain": "strain=DSM 14827", "accession": "GCA_900199195.1", "taxid": 184748, "species_taxid": 184748, "relation_to_type": "type", "validated": true, "ani": 78.8065, "matched_fragments": 455, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus shandongensis", "strain": "strain=wg2", "accession": "GCA_017315735.1", "taxid": 2816048, "species_taxid": 2816048, "relation_to_type": "type", "validated": true, "ani": 78.6973, "matched_fragments": 456, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus aerius", "strain": "strain=KCTC 42845", "accession": "GCA_016757275.1", "taxid": 1915382, "species_taxid": 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163, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003591515.1", "gtdb_species": "s__Paracoccus sp003591515", "ani": 100.0, "matched_fragments": 1564, "total_fragments": 1567, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_003007735.2", "gtdb_species": "s__Paracoccus marinus_A", "ani": 81.4254, "matched_fragments": 746, "total_fragments": 1567, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus", "ani_circumscription_radius": 95.0, 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