{ "type": "genome", "identifier": "GCF_003594875.1", "organism": "Bailinhaonella thermotolerans", "title": "Bailinhaonella thermotolerans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Yunnan institute of microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003594875.1", "bioproject": "PRJNA224116", "biosample": "SAMN10080532", "wgs_master": "QZEY00000000.1", "refseq_category": "reference genome", "taxid": "1070861", "species_taxid": "1070861", "organism_name": "Bailinhaonella thermotolerans", "infraspecific_name": "strain=YIM 75507", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/25", "asm_name": "ASM359487v1", "asm_submitter": "Yunnan institute of microbiology", "gbrs_paired_asm": "GCA_003594875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/594/875/GCF_003594875.1_ASM359487v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8989662", "genome_size_ungapped": "8989592", "gc_percent": "74.000000", "replicon_count": "0", "scaffold_count": "62", "contig_count": "62", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003594875.1-RS_2024_04_07", "annotation_date": "2024-04-07", "total_gene_count": "8166", "protein_coding_gene_count": "8032", "non_coding_gene_count": "71", "pubmed_id": "31046875" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-25", "dateModified": "2018-09-25", "datePublished": "2018-09-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Bailinhaonella thermotolerans" ], "sample_taxid": [ "1070861" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "2.374 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 8.8, "strain_heterogeneity": 25.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8989662", "Number of Sequences": "62", "Longest Sequences (bp)": "1084278", "N50 (bp)": "339492", "Gap Ratio (%)": "0.000779", "GCcontent (%)": "73.8", "Number of CDSs": "8283", "Average Protein Length": "316.0", "Coding Ratio (%)": "87.4", "Number of rRNAs": "0", "Number of tRNAs": "80", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nonomuraea roseoviolacea subsp. carminata", "strain": "strain=DSM 44170", "accession": "GCA_024172185.1", "taxid": 160689, "species_taxid": 103837, "relation_to_type": "type", "validated": true, "ani": 79.0208, "matched_fragments": 1391, "total_fragments": 2970, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planobispora longispora", "strain": "strain=NBRC 13918", "accession": "GCA_016863135.1", "taxid": 28887, "species_taxid": 28887, "relation_to_type": "type", "validated": true, "ani": 78.9868, "matched_fragments": 1344, "total_fragments": 2970, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea rhizosphaerae", "strain": "strain=CGMCC 4.7431", "accession": "GCA_019396405.1", "taxid": 2665663, "species_taxid": 2665663, "relation_to_type": "type", "validated": true, "ani": 78.9439, "matched_fragments": 899, "total_fragments": 2970, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptosporangium pseudovulgare", "strain": "strain=JCM 3115", "accession": "GCA_014648055.1", "taxid": 35765, "species_taxid": 35765, "relation_to_type": "type", 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78.7826, "matched_fragments": 1469, "total_fragments": 2970, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planomonospora parontospora subsp. antibiotica", "strain": "strain=JCM 3094", "accession": "GCA_014647955.1", "taxid": 97193, "species_taxid": 58119, "relation_to_type": "type", "validated": true, "ani": 78.7659, "matched_fragments": 1226, "total_fragments": 2970, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptosporangium becharense", "strain": "strain=DSM 46887", "accession": "GCA_014204985.1", "taxid": 1816182, "species_taxid": 1816182, "relation_to_type": "type", "validated": true, "ani": 78.7178, "matched_fragments": 1102, "total_fragments": 2970, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptosporangium becharense", "strain": "strain=CECT 8961", "accession": "GCA_014191075.1", "taxid": 1816182, "species_taxid": 1816182, "relation_to_type": "type", "validated": true, "ani": 78.7048, "matched_fragments": 1079, "total_fragments": 2970, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea pusilla", "strain": "strain=DSM 43357", "accession": "GCA_900109355.1", "taxid": 46177, "species_taxid": 46177, "relation_to_type": "type", "validated": true, "ani": 78.6664, "matched_fragments": 1304, "total_fragments": 2970, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbispora rosea subsp. aerata", "strain": "strain=JCM 3076", "accession": "GCA_014647835.1", "taxid": 147065, "species_taxid": 58117, "relation_to_type": "type", "validated": true, "ani": 78.6579, "matched_fragments": 1040, "total_fragments": 2970, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbispora rosea subsp. aerata", "strain": "strain=NBRC 14624", "accession": "GCA_016863075.1", "taxid": 147065, "species_taxid": 58117, "relation_to_type": "type", "validated": true, "ani": 78.6169, "matched_fragments": 1047, "total_fragments": 2970, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbispora hainanensis", "strain": "strain=DSM 45428", "accession": "GCA_006874475.1", "taxid": 568844, "species_taxid": 568844, "relation_to_type": "type", "validated": true, "ani": 78.5633, "matched_fragments": 1134, "total_fragments": 2970, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerisporangium corydalis", "strain": "strain=NEAU-YHS15", "accession": "GCA_025506355.1", "taxid": 1441875, "species_taxid": 1441875, "relation_to_type": "type", "validated": true, "ani": 78.5082, "matched_fragments": 1215, "total_fragments": 2970, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea harbinensis", "strain": "strain=CGMCC 4.7106", "accession": "GCA_019396385.1", "taxid": 1286938, "species_taxid": 1286938, "relation_to_type": "type", "validated": true, "ani": 78.5, "matched_fragments": 1272, "total_fragments": 2970, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbispora amethystogenes", "strain": "strain=NBRC 101907", "accession": "GCA_016863015.1", "taxid": 1427754, "species_taxid": 1427754, "relation_to_type": "type", "validated": true, "ani": 78.4626, "matched_fragments": 1090, "total_fragments": 2970, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptosporangium saharense", "strain": "strain=CECT 8840", "accession": "GCA_014203715.1", "taxid": 1706840, "species_taxid": 1706840, "relation_to_type": "type", "validated": true, "ani": 78.453, "matched_fragments": 1136, "total_fragments": 2970, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbispora cellulosiformans", "strain": "strain=Gxj-6", "accession": "GCA_008728085.1", "taxid": 2614688, "species_taxid": 2614688, "relation_to_type": "type", "validated": true, "ani": 78.4105, "matched_fragments": 1098, "total_fragments": 2970, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerisporangium krabiense", "strain": "strain=DSM 45790", "accession": "GCA_014200435.1", "taxid": 763782, "species_taxid": 763782, "relation_to_type": "type", "validated": true, "ani": 78.4094, "matched_fragments": 1230, "total_fragments": 2970, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea solani", "strain": "strain=CGMCC 4.7037", "accession": "GCA_900108335.1", "taxid": 1144553, "species_taxid": 1144553, "relation_to_type": "type", "validated": true, "ani": 78.3561, "matched_fragments": 1413, "total_fragments": 2970, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea endophytica", "strain": "strain=DSM 45385", "accession": "GCA_014203235.1", "taxid": 714136, "species_taxid": 714136, "relation_to_type": "type", "validated": true, "ani": 78.3422, "matched_fragments": 1391, "total_fragments": 2970, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"accession": "GCA_017896165.1", "taxid": 2806554, "species_taxid": 2806554, "relation_to_type": "type", "validated": true, "ani": 78.1895, "matched_fragments": 1006, "total_fragments": 2970, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planotetraspora silvatica", "strain": "strain=NBRC 100141", "accession": "GCA_016863315.1", "taxid": 234614, "species_taxid": 234614, "relation_to_type": "type", "validated": true, "ani": 78.1584, "matched_fragments": 975, "total_fragments": 2970, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura logoneensis", "strain": "strain=NEAU-G17", "accession": "GCA_003428695.1", "taxid": 2293572, "species_taxid": 2293572, "relation_to_type": "type", "validated": true, "ani": 77.7696, "matched_fragments": 1000, "total_fragments": 2970, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura oligospora", "strain": "strain=ATCC 43269", "accession": "GCA_000518265.1", "taxid": 111804, "species_taxid": 111804, "relation_to_type": "type", "validated": true, "ani": 77.5867, "matched_fragments": 1143, "total_fragments": 2970, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura flavalba", "strain": "strain=DSM 45200", "accession": "GCA_000374305.1", "taxid": 1120938, "species_taxid": 1120938, "relation_to_type": "type", "validated": true, "ani": 77.5849, "matched_fragments": 973, "total_fragments": 2970, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura bangladeshensis", "strain": "strain=DSM 45347", "accession": "GCA_004348335.1", "taxid": 453573, "species_taxid": 453573, "relation_to_type": "type", "validated": true, "ani": 77.557, "matched_fragments": 1036, "total_fragments": 2970, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura rupiterrae", "strain": "strain=DSM 45251", "accession": "GCA_024172125.1", "taxid": 559627, "species_taxid": 559627, 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74.7488, "matched_fragments": 377, "total_fragments": 2970, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.54, "contamination": 8.8, "strain_heterogeneity": 25.0 }, "gtdb_result": [ { "accession": "GCF_003594875.1", "gtdb_species": "s__Bailinhaonella thermotolerans", "ani": 100.0, "matched_fragments": 2968, "total_fragments": 2970, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Bailinhaonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_014203605.1", "gtdb_species": "s__Planomonospora_A venezuelensis", "ani": 79.0338, "matched_fragments": 1306, "total_fragments": 2970, "gtdb_taxonomy": 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