{ "type": "genome", "identifier": "GCF_003594885.1", "organism": "Vallicoccus soli", "title": "Vallicoccus soli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Yunnan institute of microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003594885.1", "bioproject": "PRJNA224116", "biosample": "SAMN10080740", "wgs_master": "QZEZ00000000.1", "refseq_category": "reference genome", "taxid": "2339232", "species_taxid": "2339232", "organism_name": "Vallicoccus soli", "infraspecific_name": "strain=YIM 75000", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/25", "asm_name": "ASM359488v1", "asm_submitter": "Yunnan institute of microbiology", "gbrs_paired_asm": "GCA_003594885.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/594/885/GCF_003594885.1_ASM359488v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4045354", "genome_size_ungapped": "4045324", "gc_percent": "77.000000", "replicon_count": "0", "scaffold_count": "20", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003594885.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "3823", "protein_coding_gene_count": "3732", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-25", "dateModified": "2018-09-25", "datePublished": "2018-09-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Vallicoccus soli" ], "sample_taxid": [ "2339232" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], 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"status": "below_threshold" }, { "organism_name": "Motilibacter rhizosphaerae", "strain": "strain=DSM 45622", "accession": "GCA_004216915.1", "taxid": 598652, "species_taxid": 598652, "relation_to_type": "type", "validated": true, "ani": 78.2681, "matched_fragments": 626, "total_fragments": 1341, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Motilibacter deserti", "strain": "strain=E257", "accession": "GCA_011250635.1", "taxid": 2714956, "species_taxid": 2714956, "relation_to_type": "type", "validated": true, "ani": 78.1611, "matched_fragments": 615, "total_fragments": 1341, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Motilibacter aurantiacus", "strain": "strain=K478", "accession": "GCA_011250645.1", "taxid": 2714955, "species_taxid": 2714955, "relation_to_type": "type", "validated": true, "ani": 78.0925, "matched_fragments": 658, "total_fragments": 1341, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"matched_fragments": 584, "total_fragments": 1341, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planobispora takensis", "strain": "strain=NBRC 109077", "accession": "GCA_016863195.1", "taxid": 1367882, "species_taxid": 1367882, "relation_to_type": "type", "validated": true, "ani": 76.6773, "matched_fragments": 583, "total_fragments": 1341, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces roseolilacinus", "strain": "strain=JCM 4335", "accession": "GCA_014649335.1", "taxid": 66904, "species_taxid": 66904, "relation_to_type": "type", "validated": true, "ani": 76.6194, "matched_fragments": 610, "total_fragments": 1341, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbidospora solisilvae", "strain": "strain=NEAU-GS84", "accession": "GCA_009901565.1", "taxid": 2696284, "species_taxid": 2696284, "relation_to_type": "type", "validated": true, "ani": 76.6134, "matched_fragments": 553, "total_fragments": 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"strain=CYP1-1B", "accession": "GCA_008923365.1", "taxid": 1803903, "species_taxid": 1803903, "relation_to_type": "type", "validated": true, "ani": 76.447, "matched_fragments": 714, "total_fragments": 1341, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura chibensis", "strain": "strain=JCM 14158", "accession": "GCA_008085895.1", "taxid": 392828, "species_taxid": 392828, "relation_to_type": "type", "validated": true, "ani": 76.3265, "matched_fragments": 707, "total_fragments": 1341, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura chibensis", "strain": "strain=NBRC 106107", "accession": "GCA_001552135.1", "taxid": 392828, "species_taxid": 392828, "relation_to_type": "type", "validated": true, "ani": 76.3257, "matched_fragments": 693, "total_fragments": 1341, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ 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