{ "type": "genome", "identifier": "GCF_003595175.1", "organism": "Pseudomonas cavernae", "title": "Pseudomonas cavernae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003595175.1", "bioproject": "PRJNA224116", "biosample": "SAMN10055746", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2320867", "species_taxid": "2320867", "organism_name": "Pseudomonas cavernae", "infraspecific_name": "strain=K2W31S-8", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/25", "asm_name": "ASM359517v1", "asm_submitter": "Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_003595175.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/595/175/GCF_003595175.1_ASM359517v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4949615", "genome_size_ungapped": "4949615", "gc_percent": "64.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003595175.1-RS_2024_03_27", "annotation_date": "2024-03-27", "total_gene_count": "4519", "protein_coding_gene_count": "4344", "non_coding_gene_count": "85", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-25", "dateModified": "2018-09-25", "datePublished": "2018-09-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas cavernae" ], "sample_taxid": [ "2320867" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Guizhou" ], 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"accession": "GCA_000467105.1", "taxid": 43263, "species_taxid": 43263, "relation_to_type": "type", "validated": true, "ani": 83.6341, "matched_fragments": 927, "total_fragments": 1649, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas campi", "strain": "strain=S1-A32-2", "accession": "GCA_013200955.2", "taxid": 2731681, "species_taxid": 2731681, "relation_to_type": "type", "validated": true, "ani": 83.6006, "matched_fragments": 921, "total_fragments": 1649, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas guryensis", "strain": "strain=SR9", "accession": "GCA_014164785.1", "taxid": 2759165, "species_taxid": 2759165, "relation_to_type": "type", "validated": true, "ani": 83.3496, "matched_fragments": 912, "total_fragments": 1649, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas ullengensis", "strain": "strain=UL070", "accession": "GCA_014174475.1", "taxid": 2759166, "species_taxid": 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