{ "type": "genome", "identifier": "GCF_003595215.1", "organism": "Nesterenkonia natronophila", "title": "Nesterenkonia natronophila", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Instituto de Higiene, UdelaR", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003595215.1", "bioproject": "PRJNA224116", "biosample": "SAMN10039527", "wgs_master": "QYZP00000000.1", "refseq_category": "reference genome", "taxid": "2174932", "species_taxid": "2174932", "organism_name": "Nesterenkonia natronophila", "infraspecific_name": "strain=M8", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/25", "asm_name": "ASM359521v1", "asm_submitter": "Instituto de Higiene, UdelaR", "gbrs_paired_asm": "GCA_003595215.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/595/215/GCF_003595215.1_ASM359521v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2524489", "genome_size_ungapped": "2524489", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "11", "contig_count": "11", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003595215.1-RS_2024_08_04", "annotation_date": "2024-08-04", "total_gene_count": "2351", "protein_coding_gene_count": "2279", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-25", "dateModified": "2018-09-25", "datePublished": "2018-09-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Nesterenkonia natronophila" ], "sample_taxid": [ "2174932" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Tanzania: Lake Magadi, Arusha region" ], "sample_host_location_id": [], "data_size": "0.713 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2524489", "Number of Sequences": "11", "Longest Sequences (bp)": "1083751", "N50 (bp)": "848600", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.8", "Number of CDSs": "2300", "Average Protein Length": "334.1", "Coding Ratio (%)": "91.3", "Number of rRNAs": "2", "Number of tRNAs": "47", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nesterenkonia natronophila", "strain": "strain=M8", "accession": "GCA_003595215.1", "taxid": 2174932, "species_taxid": 2174932, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 837, "total_fragments": 837, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nesterenkonia sphaerica", "strain": "strain=GY239", "accession": "GCA_005771565.1", "taxid": 1804988, "species_taxid": 1804988, "relation_to_type": "type", "validated": true, "ani": 81.1697, "matched_fragments": 557, "total_fragments": 837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia salmonea", "strain": "strain=GY074", "accession": "GCA_005771525.1", "taxid": 1804987, "species_taxid": 1804987, "relation_to_type": "type", "validated": true, "ani": 80.05, "matched_fragments": 443, "total_fragments": 837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia haasae", "strain": "strain=Hz 6-5", "accession": "GCA_010119385.1", "taxid": 2587813, "species_taxid": 2587813, "relation_to_type": "type", "validated": true, "ani": 79.9829, "matched_fragments": 452, "total_fragments": 837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia alkaliphila", "strain": "strain=CGMCC 1.12781", "accession": "GCA_014639295.1", "taxid": 1463631, "species_taxid": 1463631, "relation_to_type": "type", "validated": true, "ani": 78.4683, "matched_fragments": 295, "total_fragments": 837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia sedimenti", "strain": "strain=MY13", "accession": "GCA_012641515.1", "taxid": 1463632, "species_taxid": 1463632, "relation_to_type": "type", "validated": true, "ani": 78.4506, "matched_fragments": 245, "total_fragments": 837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia ebinurensis", "strain": "strain=MD2", "accession": "GCA_008711175.1", "taxid": 2608252, "species_taxid": 2608252, "relation_to_type": "type", "validated": true, "ani": 78.3937, "matched_fragments": 311, "total_fragments": 837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"accession": "GCA_900475555.1", "taxid": 1270, "species_taxid": 1270, "relation_to_type": "type", "validated": true, "ani": 76.9441, "matched_fragments": 82, "total_fragments": 837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter pullicola", "strain": "strain=Sa2BUA2", "accession": "GCA_014836875.1", "taxid": 2762224, "species_taxid": 2762224, "relation_to_type": "type", "validated": true, "ani": 76.8161, "matched_fragments": 74, "total_fragments": 837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter stackebrandtii", "strain": "strain=DSM 16005", "accession": "GCA_017876675.1", "taxid": 272161, "species_taxid": 272161, "relation_to_type": "type", "validated": true, "ani": 76.7699, "matched_fragments": 59, "total_fragments": 837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruania zhangjianzhongii", "strain": "strain=HY168", "accession": "GCA_008000995.1", "taxid": 2603206, 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